Plasmid CP030486.1

Sequence

Nucleotide Information

Accession CP030486.1
Description Staphylococcus aureus strain ER03913.3 plasmid unnamed4, complete sequence
Source insd
Topology circular
Length 3124 bp
GC Content 0.29 %
Created at NCBI Oct. 10, 2019



Assembly

Genome Data Information

Accession GCA_008935495.1
Assembly Coverage 340.704


Biosample

Curated Collection Information
Accession 9484030

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.7903114N;73.9528738W
Original Query Type coordinates
Coordinates (Lat/Lon) 40.79/-73.95
Address Guggenheim Pavilion, 1190, 5th Avenue, Manhattan Community Board 11, Manhattan, New York County, New York, 10029, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP025486.1 See Comparison
NZ_CP025490.1 See Comparison
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CP152324.1 See Comparison
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CP151573.1 See Comparison
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NZ_CP151119.1 See Comparison
NZ_CP150659.1 See Comparison
NZ_CP148078.1 See Comparison
NZ_CP149808.1 See Comparison
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NZ_CP147701.1 See Comparison
NZ_CP147690.1 See Comparison
CP150111.1 See Comparison
NZ_CP002133.1 See Comparison
NZ_CP002150.1 See Comparison
NZ_CP002140.1 See Comparison
NZ_CP002142.1 See Comparison
NZ_CP069479.1 See Comparison
NZ_CP069536.1 See Comparison
NZ_CP069472.1 See Comparison
NZ_CP055226.1 See Comparison
NZ_CP062440.1 See Comparison
NZ_CP099578.1 See Comparison
NZ_CP081356.1 See Comparison
NZ_CP092054.1 See Comparison
NZ_CP080559.1 See Comparison
NZ_CP014430.1 See Comparison
NZ_CP014413.1 See Comparison
NZ_CP014393.1 See Comparison
NZ_CP014436.1 See Comparison
NZ_CP014421.1 See Comparison
NZ_CP014403.1 See Comparison
NZ_CP014442.1 See Comparison
NZ_CP014424.1 See Comparison
NZ_CP014398.1 See Comparison
NC_012417.1 See Comparison
NZ_CP014410.1 See Comparison
NZ_CP014433.1 See Comparison
NC_013297.1 See Comparison
NC_013295.1 See Comparison
NZ_CP014439.1 See Comparison
NZ_CP014427.1 See Comparison
NZ_CP009424.1 See Comparison
NZ_CP007178.1 See Comparison
NC_013300.1 See Comparison
NC_007790.1 See Comparison
CP030486.1 See Comparison
NZ_CP043391.1 See Comparison
NZ_CP043394.1 See Comparison
NZ_CP043388.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2