Plasmid NZ_CP145642.1
Sequence
Nucleotide Information
| Accession | NZ_CP145642.1 |
|---|---|
| Description | Escherichia coli strain S1-ISR-02-A plasmid p6-S1-ISR-02-A, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 5167 bp |
| GC Content | 0.47 % |
| Created at NCBI | April 5, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 33052311 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 46.947928N;7.422277E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 46.95/7.42 |
| Address | Inselspital, 18, Freiburgstrasse, Holligen, Stadtteil III, Bern, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3010, Switzerland |
ECOSYSTEM
| Original Query | Homo sapiens,stool |
|---|---|
| Classification | fecal,gastrointestinal_system,host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | Gut colonization |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
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Sequence
- Accession: NZ_CP113490.1
- Description: Escherichia coli strain GTEN_23 plasmid unnamed4, complete sequence
- Source: refseq
- Created at NCBI: Dec. 9, 2022
-
Host Taxonomy
Assigned Host: Escherichia coli (562)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Escherichia (561)
- Species : Escherichia_coli (562)
- Strain:
-
Biosample
Accession: 11875193 - GEOGRAPHICAL INFORMATION
- Original Query: USA,Massachusetts
- Original Query Type: name
- Address: USA,Massachusetts
- Coordinates (Lat/Lon): 42.38/-72.03
- ECOSYSTEM
- Original Query: Homo sapiens
- Classification: host_associated
- Host-associated Taxon:
- Homo sapiens (9606)
Visualization
-
Sequence
- Accession: NZ_CP056331.1
- Description: Klebsiella pneumoniae strain RHBSTW-00807 plasmid pRHBSTW-00807_3, complete sequence
- Source: refseq
- Created at NCBI: Aug. 3, 2020
-
Host Taxonomy
Assigned Host: Klebsiella pneumoniae (573)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Klebsiella (570)
- Species : Klebsiella_pneumoniae (573)
- Strain:
-
Biosample
Accession: 15148699 - GEOGRAPHICAL INFORMATION
- Original Query: United Kingdom
- Original Query Type: name
- Address: United Kingdom
- Coordinates (Lat/Lon): 54.70/-3.28
- ECOSYSTEM
- Original Query: culture,Wastewater influent sample
- Classification: cell_culture,wastewater
- Host-associated Taxon:
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | replication initiation protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | MobA/MobL family protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | MOBQ | copy | ||
| MOB-typer | Col156 | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 7 of 7 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | CP001126_00001 | Col156 | 1 | 776 | plus | 96.907 | 83 | 0 | 1301 |
| relaxase | NC_019783_00003 | MOBQ | 1694 | 2617 | plus | 98.052 | 100 | 0 | 627 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |