Plasmid NZ_CP145642.1

Sequence

Nucleotide Information

Accession	NZ_CP145642.1
Description	Escherichia coli strain S1-ISR-02-A plasmid p6-S1-ISR-02-A, complete sequence
Source	refseq
Topology	circular
Length	5167 bp
GC Content	0.47 %
Created at NCBI	April 5, 2024

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_036884415.1
Assembly Coverage	388.958

Biosample

Curated Collection Information

Accession	33052311

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	46.947928N;7.422277E
Original Query Type	coordinates
Coordinates (Lat/Lon)	46.95/7.42
Address	Inselspital, 18, Freiburgstrasse, Holligen, Stadtteil III, Bern, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3010, Switzerland

ECOSYSTEM

Original Query	Homo sapiens,stool
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Gut colonization
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP056331.1	See Comparison
NZ_CP053249.1	See Comparison
NZ_CP041341.1	See Comparison
NZ_CP069870.1	See Comparison
NZ_CP069983.1	See Comparison
NZ_CP070013.1	See Comparison
NZ_CP070114.1	See Comparison
NZ_LR890331.1	See Comparison
NZ_LR890338.1	See Comparison
NZ_AP022167.1	See Comparison
NZ_CP049125.1	See Comparison
NZ_AP022051.1	See Comparison
NZ_AP022100.1	See Comparison
NZ_OP378613.1	See Comparison
NZ_CP116130.1	See Comparison
NZ_CP116139.1	See Comparison
NZ_CP113490.1	See Comparison
NZ_CP103472.1	See Comparison
NZ_CP103525.1	See Comparison
NZ_CP103483.1	See Comparison
NZ_CP091759.1	See Comparison
CP088759.1	See Comparison
NZ_CP091708.1	See Comparison
NZ_CP091687.1	See Comparison
CP088455.1	See Comparison
AP024698.1	See Comparison
NZ_CP071078.1	See Comparison
NZ_CP076696.1	See Comparison
NC_022649.1	See Comparison
NZ_CP014318.1	See Comparison
NZ_CP008716.1	See Comparison
NZ_LR130561.1	See Comparison
NZ_CP034960.1	See Comparison
NZ_CP035126.1	See Comparison
CP136917.1	See Comparison
NZ_CP024722.1	See Comparison
NZ_AP027568.1	See Comparison
NZ_CP107131.1	See Comparison
CP125074.1	See Comparison
CP124982.1	See Comparison
NZ_CP145686.1	See Comparison
NZ_AP027560.1	See Comparison
NZ_CP145650.1	See Comparison
NZ_LR890331.1	See Comparison
NZ_CP041341.1	See Comparison
NZ_CP069870.1	See Comparison
NZ_CP069983.1	See Comparison
NZ_CP070013.1	See Comparison
NZ_CP070114.1	See Comparison
NZ_CP142934.1	See Comparison
NZ_CP056331.1	See Comparison
NZ_CP053249.1	See Comparison
NZ_LR890338.1	See Comparison
NZ_AP022167.1	See Comparison
NZ_CP049125.1	See Comparison
NZ_CP091759.1	See Comparison
NZ_AP022051.1	See Comparison
NZ_AP022100.1	See Comparison
NZ_OP378613.1	See Comparison
NZ_CP116130.1	See Comparison
NZ_CP113490.1	See Comparison
NZ_CP116139.1	See Comparison
NZ_CP103472.1	See Comparison
NZ_CP103525.1	See Comparison
NZ_CP103483.1	See Comparison
NZ_CP091708.1	See Comparison
NZ_CP091687.1	See Comparison
AP024698.1	See Comparison
CP088759.1	See Comparison
CP088455.1	See Comparison
NZ_CP071078.1	See Comparison
NZ_CP076696.1	See Comparison
NC_022649.1	See Comparison
NZ_CP014318.1	See Comparison
NZ_CP008716.1	See Comparison
NZ_LR130561.1	See Comparison
NZ_CP034960.1	See Comparison
CP125074.1	See Comparison
NZ_CP035126.1	See Comparison
CP136917.1	See Comparison
NZ_CP024722.1	See Comparison
NZ_CP107131.1	See Comparison
CP124982.1	See Comparison
NZ_CP145686.1	See Comparison
NZ_CP145650.1	See Comparison
NZ_CP069870.1	See Comparison
NZ_AP027568.1	See Comparison
NZ_CP142934.1	See Comparison
NZ_CP056331.1	See Comparison
NZ_CP053249.1	See Comparison
NZ_CP041341.1	See Comparison
NZ_AP027560.1	See Comparison
NZ_CP069983.1	See Comparison
NZ_CP070013.1	See Comparison
NZ_CP070114.1	See Comparison
NZ_AP022167.1	See Comparison
NZ_LR890331.1	See Comparison
NZ_LR890338.1	See Comparison
NZ_CP103472.1	See Comparison
NZ_CP049125.1	See Comparison
NZ_AP022051.1	See Comparison
NZ_AP022100.1	See Comparison
NZ_OP378613.1	See Comparison
NZ_CP116130.1	See Comparison
NZ_CP116139.1	See Comparison
NZ_CP113490.1	See Comparison
NZ_CP103525.1	See Comparison
NZ_CP103483.1	See Comparison
NZ_CP091708.1	See Comparison
NZ_CP091759.1	See Comparison
NZ_CP091687.1	See Comparison
CP088759.1	See Comparison
CP088455.1	See Comparison
NZ_CP008716.1	See Comparison
AP024698.1	See Comparison
NZ_CP071078.1	See Comparison
NZ_CP076696.1	See Comparison
NZ_CP014318.1	See Comparison
CP136917.1	See Comparison
NZ_CP034960.1	See Comparison
NZ_CP035126.1	See Comparison
NZ_CP024722.1	See Comparison
NC_022649.1	See Comparison
NZ_LR130561.1	See Comparison
NZ_CP107131.1	See Comparison
NZ_AP027568.1	See Comparison
CP124982.1	See Comparison
NZ_CP145686.1	See Comparison
NZ_CP145650.1	See Comparison
NZ_AP027560.1	See Comparison
CP125074.1	See Comparison
NZ_CP142934.1	See Comparison
NZ_CP056331.1	See Comparison
NZ_CP069870.1	See Comparison
NZ_CP053249.1	See Comparison
NZ_CP041341.1	See Comparison
NZ_CP069983.1	See Comparison
NZ_CP070013.1	See Comparison
NZ_CP070114.1	See Comparison
NZ_LR890331.1	See Comparison
NZ_LR890338.1	See Comparison
NZ_CP049125.1	See Comparison
NZ_AP022167.1	See Comparison
NZ_OP378613.1	See Comparison
NZ_AP022051.1	See Comparison
NZ_AP022100.1	See Comparison
NZ_CP091759.1	See Comparison
NZ_CP116130.1	See Comparison
NZ_CP116139.1	See Comparison
NZ_CP113490.1	See Comparison
NZ_CP103472.1	See Comparison
NZ_CP103525.1	See Comparison
NZ_CP103483.1	See Comparison
CP088455.1	See Comparison
NZ_CP091708.1	See Comparison
NZ_CP091687.1	See Comparison
NZ_CP076696.1	See Comparison
CP088759.1	See Comparison
AP024698.1	See Comparison
NZ_CP071078.1	See Comparison
NC_022649.1	See Comparison
NZ_CP014318.1	See Comparison
NZ_CP008716.1	See Comparison
NZ_CP034960.1	See Comparison
NZ_CP035126.1	See Comparison
CP136917.1	See Comparison
NZ_CP024722.1	See Comparison
NZ_LR130561.1	See Comparison
NZ_CP107131.1	See Comparison
NZ_CP145642.1	See Comparison
NZ_CP145650.1	See Comparison
CP125074.1	See Comparison
CP124982.1	See Comparison
NZ_CP145686.1	See Comparison
NZ_AP027560.1	See Comparison
NZ_AP027568.1	See Comparison
NZ_CP069870.1	See Comparison
NZ_CP142934.1	See Comparison
NZ_CP056331.1	See Comparison
NZ_CP053249.1	See Comparison
NZ_CP041341.1	See Comparison
NZ_CP070114.1	See Comparison
NZ_CP069983.1	See Comparison
NZ_CP070013.1	See Comparison
NZ_CP049125.1	See Comparison
NZ_LR890331.1	See Comparison
NZ_LR890338.1	See Comparison
NZ_AP022167.1	See Comparison
NZ_CP091759.1	See Comparison
NZ_CP116130.1	See Comparison
NZ_CP116139.1	See Comparison
NZ_CP113490.1	See Comparison
NZ_AP022051.1	See Comparison
NZ_AP022100.1	See Comparison
NZ_OP378613.1	See Comparison
NZ_CP103472.1	See Comparison
NZ_CP103525.1	See Comparison
NZ_CP103483.1	See Comparison
NZ_CP076696.1	See Comparison
NZ_CP091708.1	See Comparison
NZ_CP091687.1	See Comparison
CP088759.1	See Comparison
CP088455.1	See Comparison
AP024698.1	See Comparison
NZ_CP014318.1	See Comparison
NZ_CP071078.1	See Comparison
NZ_CP008716.1	See Comparison
NZ_LR130561.1	See Comparison
NC_022649.1	See Comparison
NZ_CP024722.1	See Comparison
NZ_CP034960.1	See Comparison
NZ_CP035126.1	See Comparison
NZ_AP027568.1	See Comparison
CP136917.1	See Comparison
NZ_CP107131.1	See Comparison
NZ_CP145650.1	See Comparison
CP125074.1	See Comparison
CP124982.1	See Comparison
NZ_CP145686.1	See Comparison
NZ_AP027560.1	See Comparison
NZ_CP142934.1	See Comparison
NZ_CP069870.1	See Comparison
NZ_CP056331.1	See Comparison
NZ_CP053249.1	See Comparison
NZ_CP041341.1	See Comparison
NZ_CP069983.1	See Comparison
NZ_CP070013.1	See Comparison
NZ_CP070114.1	See Comparison
NZ_AP022051.1	See Comparison
NZ_CP049125.1	See Comparison
NZ_LR890331.1	See Comparison
NZ_LR890338.1	See Comparison
NZ_AP022167.1	See Comparison
NZ_AP022100.1	See Comparison
NZ_CP116130.1	See Comparison
NZ_OP378613.1	See Comparison
NZ_CP116139.1	See Comparison
NZ_CP113490.1	See Comparison
NZ_CP103472.1	See Comparison
NZ_CP103525.1	See Comparison
NZ_CP103483.1	See Comparison
NZ_CP091708.1	See Comparison
NZ_CP091759.1	See Comparison
NZ_CP091687.1	See Comparison
NZ_CP076696.1	See Comparison
CP088759.1	See Comparison
CP088455.1	See Comparison
AP024698.1	See Comparison
NZ_LR130561.1	See Comparison
NZ_CP071078.1	See Comparison
NC_022649.1	See Comparison
NZ_CP014318.1	See Comparison
NZ_CP008716.1	See Comparison
NZ_CP034960.1	See Comparison
NZ_CP035126.1	See Comparison
NZ_AP027568.1	See Comparison
CP136917.1	See Comparison
NZ_CP107131.1	See Comparison
CP125074.1	See Comparison
NZ_CP145650.1	See Comparison
NZ_CP024722.1	See Comparison
CP124982.1	See Comparison
NZ_CP145686.1	See Comparison
NZ_CP142934.1	See Comparison
NZ_AP027560.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP113490.1

Sequence

Accession: NZ_CP113490.1
Description: Escherichia coli strain GTEN_23 plasmid unnamed4, complete sequence
Source: refseq
Created at NCBI: Dec. 9, 2022

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 11875193

GEOGRAPHICAL INFORMATION

Original Query: USA,Massachusetts
Original Query Type: name
Address: USA,Massachusetts
Coordinates (Lat/Lon): 42.38/-72.03

ECOSYSTEM

Original Query: Homo sapiens
Classification: host_associated
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

NZ_CP056331.1

Sequence

Accession: NZ_CP056331.1
Description: Klebsiella pneumoniae strain RHBSTW-00807 plasmid pRHBSTW-00807_3, complete sequence
Source: refseq
Created at NCBI: Aug. 3, 2020

Host Taxonomy

Assigned Host: Klebsiella pneumoniae (573)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Klebsiella (570)
Species : Klebsiella_pneumoniae (573)
Strain:

Biosample

Accession: 15148699

GEOGRAPHICAL INFORMATION

Original Query: United Kingdom
Original Query Type: name
Address: United Kingdom
Coordinates (Lat/Lon): 54.70/-3.28

ECOSYSTEM

Original Query: culture,Wastewater influent sample
Classification: cell_culture,wastewater
Host-associated Taxon:

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore