Plasmid NZ_CP116130.1

Sequence

Nucleotide Information

Accession	NZ_CP116130.1
Description	Escherichia coli strain DETEC-P666 plasmid pDETEC27, complete sequence
Source	refseq
Topology	circular
Length	5167 bp
GC Content	0.48 %
Created at NCBI	Jan. 25, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_027944795.1
Assembly Coverage	10

Biosample

Curated Collection Information

Accession	31988472

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	China,Guangzhou
Original Query Type	name
Coordinates (Lat/Lon)	23.13/113.26
Address	China,Guangzhou

ECOSYSTEM

Original Query	whole organism,ICU patient oral swab
Classification	disease,host_associated,oral
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP	Disease (DOID:4 ) A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

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NZ_CP070180.1	See Comparison
NZ_CP069870.1	See Comparison
NZ_CP069983.1	See Comparison
NZ_CP070013.1	See Comparison
NZ_CP070114.1	See Comparison
NZ_AP022329.1	See Comparison
NZ_LR890331.1	See Comparison
NZ_LR890695.1	See Comparison
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NZ_CP063777.1	See Comparison
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NZ_CP124465.1	See Comparison
NZ_CP124433.1	See Comparison
NZ_CP124408.1	See Comparison
NZ_CP124418.1	See Comparison
NZ_CP124438.1	See Comparison
NZ_CP124422.1	See Comparison
CP125078.1	See Comparison
NZ_CP124457.1	See Comparison
NZ_CP124390.1	See Comparison
CP125074.1	See Comparison
CP125057.1	See Comparison
CP125048.1	See Comparison
NZ_CP124369.1	See Comparison
CP124982.1	See Comparison
NZ_OZ040270.1	See Comparison
NZ_OZ040719.1	See Comparison
NZ_OZ039048.1	See Comparison
NZ_OZ039173.1	See Comparison
NZ_CP107232.1	See Comparison
NZ_OZ040952.1	See Comparison
NZ_OZ040467.1	See Comparison
NZ_CP145624.1	See Comparison
NZ_CP145642.1	See Comparison
AP029165.1	See Comparison
NZ_CP145650.1	See Comparison
NZ_CP107238.1	See Comparison
NZ_AP027568.1	See Comparison
NZ_AP027560.1	See Comparison
NZ_CP141205.1	See Comparison
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NZ_CP095527.1	See Comparison
NZ_CP099757.1	See Comparison
NZ_CP103472.1	See Comparison
NZ_CP103525.1	See Comparison
NZ_CP103483.1	See Comparison
NZ_CP103595.1	See Comparison
OW967385.1	See Comparison
NZ_CP109879.1	See Comparison
NZ_CP104670.1	See Comparison
NZ_CP051664.1	See Comparison
NZ_CP091708.1	See Comparison
NZ_CP091687.1	See Comparison
AP024698.1	See Comparison
CP090256.1	See Comparison
CP088691.1	See Comparison
CP088455.1	See Comparison
CP088368.1	See Comparison
NZ_CP018967.1	See Comparison
NZ_CP071078.1	See Comparison
NZ_CP076696.1	See Comparison
NZ_CP014318.1	See Comparison
NZ_CP008716.1	See Comparison
NZ_CP012637.1	See Comparison
NZ_CP028586.1	See Comparison
NZ_CP010879.1	See Comparison
NC_022649.1	See Comparison
NZ_LR130561.1	See Comparison
NZ_CP023848.1	See Comparison
NZ_CP023831.1	See Comparison
NZ_CP034960.1	See Comparison
NZ_CP035126.1	See Comparison
NZ_CP032876.1	See Comparison
NZ_CP024719.1	See Comparison
NZ_CP024722.1	See Comparison
NZ_CP135669.1	See Comparison
CP136917.1	See Comparison
NZ_CP137120.1	See Comparison
NZ_CP135696.1	See Comparison
NZ_CP135703.1	See Comparison
NZ_CP135461.1	See Comparison
NZ_CP082061.1	See Comparison
NZ_CP059334.1	See Comparison
CP134902.1	See Comparison
NZ_CP107131.1	See Comparison
NZ_CP124412.1	See Comparison
NZ_CP128910.1	See Comparison
NZ_CP124427.1	See Comparison
NZ_CP124444.1	See Comparison
NZ_CP124465.1	See Comparison
NZ_CP124433.1	See Comparison
NZ_CP124408.1	See Comparison
NZ_CP124418.1	See Comparison
NZ_CP124438.1	See Comparison
NZ_CP124422.1	See Comparison
NZ_CP124457.1	See Comparison
CP125078.1	See Comparison
CP125074.1	See Comparison
CP125057.1	See Comparison
CP125048.1	See Comparison
CP124982.1	See Comparison
NZ_OZ040719.1	See Comparison
NZ_CP124390.1	See Comparison
NZ_CP124369.1	See Comparison
NZ_OZ039048.1	See Comparison
NZ_OZ039173.1	See Comparison
NZ_CP145624.1	See Comparison
NZ_OZ040952.1	See Comparison
NZ_OZ040467.1	See Comparison
NZ_OZ040270.1	See Comparison
NZ_CP145642.1	See Comparison
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CP052323.1	See Comparison
NZ_CP145650.1	See Comparison
NZ_CP107238.1	See Comparison
NZ_AP027568.1	See Comparison
NZ_AP027560.1	See Comparison
AP029165.1	See Comparison
NZ_CP141205.1	See Comparison
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NZ_CP141559.1	See Comparison
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NZ_CP056331.1	See Comparison
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NZ_CP054222.1	See Comparison
CP054339.1	See Comparison
NZ_MG649065.1	See Comparison
NZ_CP053249.1	See Comparison
CP052222.1	See Comparison
NZ_CP069830.1	See Comparison
NZ_CP070180.1	See Comparison
NZ_CP069870.1	See Comparison
NZ_CP031132.1	See Comparison
NZ_CP041341.1	See Comparison
NZ_AP022329.1	See Comparison
NZ_CP069983.1	See Comparison
NZ_CP070013.1	See Comparison
NZ_CP070114.1	See Comparison
NZ_LR890331.1	See Comparison
NZ_LR890695.1	See Comparison
NZ_LR890338.1	See Comparison
NZ_CP051619.1	See Comparison
NZ_CP063777.1	See Comparison
NZ_AP022167.1	See Comparison
NZ_AP022074.1	See Comparison
NZ_CP049125.1	See Comparison
NZ_AP021966.1	See Comparison
NZ_AP022001.1	See Comparison
NZ_AP022051.1	See Comparison
NZ_AP022034.1	See Comparison
NZ_AP022047.1	See Comparison
NZ_AP022100.1	See Comparison
NZ_AP022180.1	See Comparison
NZ_AP022067.1	See Comparison
NZ_OP378613.1	See Comparison
NZ_OP242258.1	See Comparison
NZ_CP074489.1	See Comparison
NZ_CP116149.1	See Comparison
NZ_CP116139.1	See Comparison
NZ_CP116185.1	See Comparison
NZ_CP095527.1	See Comparison
NZ_CP113490.1	See Comparison
NZ_CP099757.1	See Comparison
NZ_CP109879.1	See Comparison
NZ_CP104670.1	See Comparison
OW967385.1	See Comparison
NZ_CP103472.1	See Comparison
NZ_CP103525.1	See Comparison
NZ_CP103483.1	See Comparison
NZ_CP103595.1	See Comparison
NZ_CP051664.1	See Comparison
NZ_CP091708.1	See Comparison
NZ_CP091687.1	See Comparison
NZ_CP091759.1	See Comparison
CP134902.1	See Comparison
CP090256.1	See Comparison
CP088691.1	See Comparison
CP088455.1	See Comparison
CP088368.1	See Comparison
AP024698.1	See Comparison
NZ_CP018967.1	See Comparison
NZ_CP008716.1	See Comparison
NZ_CP012637.1	See Comparison
NC_022649.1	See Comparison
NZ_CP034960.1	See Comparison
NZ_CP035126.1	See Comparison
NZ_CP023848.1	See Comparison
NZ_CP023831.1	See Comparison
NZ_CP024719.1	See Comparison
NZ_CP024722.1	See Comparison
CP136917.1	See Comparison
NZ_CP076696.1	See Comparison
NZ_CP071078.1	See Comparison
NZ_CP014318.1	See Comparison
NZ_CP010879.1	See Comparison
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NZ_CP032876.1	See Comparison
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NZ_CP137120.1	See Comparison
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NZ_CP124433.1	See Comparison
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NZ_CP124438.1	See Comparison
NZ_CP124422.1	See Comparison
NZ_CP124457.1	See Comparison
NZ_CP124390.1	See Comparison
CP125078.1	See Comparison
CP125074.1	See Comparison
CP125057.1	See Comparison
NZ_CP124369.1	See Comparison
CP125048.1	See Comparison
NZ_OZ039173.1	See Comparison
CP124982.1	See Comparison
NZ_CP145642.1	See Comparison
NZ_OZ040952.1	See Comparison
NZ_OZ040467.1	See Comparison
NZ_OZ040270.1	See Comparison
NZ_OZ040719.1	See Comparison
NZ_OZ039048.1	See Comparison
NZ_CP145650.1	See Comparison
NZ_CP107238.1	See Comparison
NZ_CP107232.1	See Comparison
NZ_CP145624.1	See Comparison
NZ_CP141559.1	See Comparison
NZ_AP027560.1	See Comparison
NZ_AP027568.1	See Comparison
AP029165.1	See Comparison
NZ_CP141205.1	See Comparison
NZ_CP142934.1	See Comparison
NZ_CP139857.1	See Comparison
NZ_CP056331.1	See Comparison
NZ_CP139802.1	See Comparison
CP052323.1	See Comparison
NZ_CP054217.1	See Comparison
NZ_CP054222.1	See Comparison
CP052222.1	See Comparison
CP054339.1	See Comparison
NZ_MG649065.1	See Comparison
NZ_CP053249.1	See Comparison
NZ_CP070180.1	See Comparison
NZ_CP031132.1	See Comparison
NZ_CP041341.1	See Comparison
NZ_CP069870.1	See Comparison
NZ_CP069983.1	See Comparison
NZ_CP070013.1	See Comparison
NZ_CP070114.1	See Comparison
NZ_CP091759.1	See Comparison
NZ_AP022329.1	See Comparison
NZ_CP063777.1	See Comparison
NZ_CP051619.1	See Comparison
NZ_AP022074.1	See Comparison
NZ_AP022051.1	See Comparison
NZ_AP022034.1	See Comparison
NZ_AP022047.1	See Comparison
NZ_AP022100.1	See Comparison
NZ_AP022180.1	See Comparison
NZ_AP022067.1	See Comparison
NZ_AP021966.1	See Comparison
NZ_CP095527.1	See Comparison
NZ_CP113490.1	See Comparison
NZ_CP104670.1	See Comparison
NZ_CP103472.1	See Comparison
NZ_CP103525.1	See Comparison
NZ_CP103483.1	See Comparison
NZ_CP103595.1	See Comparison
OW967385.1	See Comparison
NZ_CP069830.1	See Comparison
NZ_LR890331.1	See Comparison
NZ_LR890695.1	See Comparison
NZ_LR890338.1	See Comparison
NZ_AP022167.1	See Comparison
NZ_CP049125.1	See Comparison
NZ_AP022001.1	See Comparison
NZ_OP378613.1	See Comparison
NZ_OP242258.1	See Comparison
NZ_CP074489.1	See Comparison
NZ_CP116149.1	See Comparison
NZ_CP116185.1	See Comparison
NZ_CP116139.1	See Comparison
NZ_CP109879.1	See Comparison
NZ_CP099757.1	See Comparison
NZ_CP076696.1	See Comparison
NZ_CP051664.1	See Comparison
CP090256.1	See Comparison
CP088691.1	See Comparison
CP088455.1	See Comparison
CP088368.1	See Comparison
AP024698.1	See Comparison
NZ_CP091708.1	See Comparison
NZ_CP091687.1	See Comparison
NZ_CP071078.1	See Comparison
NZ_CP014318.1	See Comparison
NZ_CP018967.1	See Comparison
NZ_CP010879.1	See Comparison
NZ_CP008716.1	See Comparison
NZ_CP012637.1	See Comparison
NZ_LR130561.1	See Comparison
NC_022649.1	See Comparison
NZ_CP032876.1	See Comparison
NZ_CP034960.1	See Comparison
NZ_CP035126.1	See Comparison
NZ_CP023848.1	See Comparison
NZ_CP023831.1	See Comparison
NZ_CP028586.1	See Comparison
NZ_CP137120.1	See Comparison
NZ_CP024719.1	See Comparison
NZ_CP024722.1	See Comparison
CP136917.1	See Comparison
CP134902.1	See Comparison
NZ_CP135669.1	See Comparison
NZ_CP135696.1	See Comparison
NZ_CP135703.1	See Comparison
NZ_CP135461.1	See Comparison
NZ_CP059334.1	See Comparison
CP125078.1	See Comparison
NZ_CP107131.1	See Comparison
NZ_CP082061.1	See Comparison
NZ_CP128910.1	See Comparison
NZ_CP124412.1	See Comparison
NZ_CP124427.1	See Comparison
NZ_CP124444.1	See Comparison
NZ_CP124465.1	See Comparison
NZ_CP124433.1	See Comparison
NZ_CP124408.1	See Comparison
NZ_CP124418.1	See Comparison
NZ_CP124438.1	See Comparison
NZ_CP124422.1	See Comparison
NZ_CP124457.1	See Comparison
CP125057.1	See Comparison
CP125048.1	See Comparison
CP124982.1	See Comparison
NZ_CP124390.1	See Comparison
NZ_CP124369.1	See Comparison
NZ_OZ040952.1	See Comparison
NZ_OZ040467.1	See Comparison
NZ_OZ040270.1	See Comparison
NZ_OZ040719.1	See Comparison
NZ_OZ039048.1	See Comparison
NZ_OZ039173.1	See Comparison
CP125074.1	See Comparison
NZ_CP145624.1	See Comparison
NZ_CP145642.1	See Comparison
NZ_AP027568.1	See Comparison
NZ_CP145650.1	See Comparison
NZ_CP107238.1	See Comparison
NZ_CP107232.1	See Comparison
NZ_AP027560.1	See Comparison
AP029165.1	See Comparison
NZ_CP141205.1	See Comparison
CP052222.1	See Comparison
NZ_CP142934.1	See Comparison
NZ_CP141559.1	See Comparison
NZ_CP139857.1	See Comparison
NZ_CP139802.1	See Comparison
NZ_CP056331.1	See Comparison
NZ_CP054217.1	See Comparison
NZ_CP054222.1	See Comparison
CP054339.1	See Comparison
NZ_MG649065.1	See Comparison
NZ_CP031132.1	See Comparison
NZ_CP053249.1	See Comparison
CP052323.1	See Comparison
NZ_CP041341.1	See Comparison
NZ_CP069830.1	See Comparison
NZ_CP070180.1	See Comparison
NZ_AP022329.1	See Comparison
NZ_CP069870.1	See Comparison
NZ_CP069983.1	See Comparison
NZ_CP070013.1	See Comparison
NZ_CP070114.1	See Comparison
NZ_LR890331.1	See Comparison
NZ_LR890695.1	See Comparison
NZ_LR890338.1	See Comparison
NZ_CP063777.1	See Comparison
NZ_AP022167.1	See Comparison
NZ_CP049125.1	See Comparison
NZ_CP051619.1	See Comparison
NZ_AP022074.1	See Comparison
NZ_AP022051.1	See Comparison
NZ_AP022034.1	See Comparison
NZ_AP022047.1	See Comparison
NZ_AP022100.1	See Comparison
NZ_AP022180.1	See Comparison
NZ_AP022067.1	See Comparison
NZ_AP021966.1	See Comparison
NZ_AP022001.1	See Comparison
NZ_OP242258.1	See Comparison
NZ_OP378613.1	See Comparison
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Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore