Plasmid CP088759.1

Sequence

Nucleotide Information

Accession CP088759.1
Description Escherichia coli strain B16EC0899 plasmid pB16EC0899-5, complete sequence
Source insd
Topology circular
Length 5168 bp
GC Content 0.47 %
Created at NCBI Dec. 9, 2021



Assembly

Genome Data Information

Accession GCF_021132855.1
Assembly Coverage 222


Biosample

Curated Collection Information
Accession 23391573

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 37.68N;126.77E
Original Query Type coordinates
Coordinates (Lat/Lon) 37.68/126.77
Address Gyeongui-ro, Daehwa-dong, 일산3동, Ilsanseo-gu, Goyang-si, 10374, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP091759.1 See Comparison
NZ_CP091687.1 See Comparison
CP088455.1 See Comparison
NZ_CP071078.1 See Comparison
NZ_CP008716.1 See Comparison
NZ_CP034960.1 See Comparison
CP136917.1 See Comparison
NZ_CP145642.1 See Comparison
CP124982.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP091687.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP091759.1 See Comparison
CP088455.1 See Comparison
NZ_CP034960.1 See Comparison
NZ_CP008716.1 See Comparison
NZ_CP071078.1 See Comparison
NZ_CP056331.1 See Comparison
CP136917.1 See Comparison
CP124982.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP145642.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_CP091687.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
CP088455.1 See Comparison
NZ_CP008716.1 See Comparison
NZ_CP071078.1 See Comparison
CP136917.1 See Comparison
NZ_CP034960.1 See Comparison
CP124982.1 See Comparison
NZ_CP145642.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_CP091687.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP034960.1 See Comparison
NZ_CP071078.1 See Comparison
CP088455.1 See Comparison
NZ_CP008716.1 See Comparison
CP136917.1 See Comparison
NZ_AP027568.1 See Comparison
CP124982.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP145642.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP091687.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP008716.1 See Comparison
CP088455.1 See Comparison
NZ_CP071078.1 See Comparison
NZ_CP056331.1 See Comparison
CP124982.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP034960.1 See Comparison
CP136917.1 See Comparison
NZ_CP145642.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP091687.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP008716.1 See Comparison
CP088759.1 See Comparison
CP088455.1 See Comparison
NZ_CP071078.1 See Comparison
NZ_CP034960.1 See Comparison
NZ_AP027568.1 See Comparison
CP136917.1 See Comparison
NZ_AP027560.1 See Comparison
CP124982.1 See Comparison
NZ_CP145642.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP071078.1 See Comparison
CP088455.1 See Comparison
NZ_CP091687.1 See Comparison
CP124982.1 See Comparison
NZ_CP008716.1 See Comparison
NZ_CP034960.1 See Comparison
CP136917.1 See Comparison
NZ_CP145642.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_CP113490.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2