Plasmid NZ_CP008716.1

Sequence

Nucleotide Information

Accession NZ_CP008716.1
Description Escherichia coli strain ST648 isolate Pleural Effusion of Patients with Empyema Thoracis plasmid pEC648_2, complete sequence
Source refseq
Topology circular
Length 5167 bp
GC Content 0.47 %
Created at NCBI Jan. 27, 2016



Assembly

Genome Data Information

Accession GCF_001485455.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 2800875

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 39.93N;116.35E
Original Query Type coordinates
Coordinates (Lat/Lon) 39.93/116.35
Address N. Fuchengmen Str, Xinjiekou, 首都功能核心区, Xicheng District, Beijing, 100032, China

ECOSYSTEM
Original Query Homo sapiens,Pleural Effusion
Classification host_associated,lung,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Empyema Thoracis
DOID/SYMP
  • Pleural empyema (DOID:3798 )
    • A soft tissue infectious disease that involves accumulation of pus in the pleural cavity as a result of infection within the lung (pneumonia) or a lung abscess spreading into the space. The symptoms include cough, fever, chest pain, sweating and shortness of breath.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP024722.1 See Comparison
CP136917.1 See Comparison
NZ_CP107131.1 See Comparison
CP125074.1 See Comparison
CP124982.1 See Comparison
NZ_CP145642.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP142934.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_LR890331.1 See Comparison
NZ_LR890338.1 See Comparison
NZ_AP022167.1 See Comparison
NZ_CP049125.1 See Comparison
NZ_OP378613.1 See Comparison
NZ_CP116130.1 See Comparison
NZ_CP116139.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP103472.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP103483.1 See Comparison
NZ_CP091708.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP091687.1 See Comparison
AP024698.1 See Comparison
CP088759.1 See Comparison
CP088455.1 See Comparison
NZ_LR130561.1 See Comparison
NZ_CP071078.1 See Comparison
NZ_CP014318.1 See Comparison
NC_022649.1 See Comparison
NZ_CP024722.1 See Comparison
NZ_CP034960.1 See Comparison
NZ_CP035126.1 See Comparison
CP136917.1 See Comparison
NZ_CP145642.1 See Comparison
NZ_CP107131.1 See Comparison
CP125074.1 See Comparison
CP124982.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_CP142934.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP091708.1 See Comparison
NZ_LR890331.1 See Comparison
NZ_LR890338.1 See Comparison
NZ_AP022167.1 See Comparison
NZ_CP049125.1 See Comparison
NZ_OP378613.1 See Comparison
NZ_CP116130.1 See Comparison
NZ_CP116139.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP103472.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP103483.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP091687.1 See Comparison
CP088455.1 See Comparison
AP024698.1 See Comparison
CP088759.1 See Comparison
NZ_CP014318.1 See Comparison
NZ_CP071078.1 See Comparison
NC_022649.1 See Comparison
NZ_CP034960.1 See Comparison
NZ_LR130561.1 See Comparison
NZ_CP024722.1 See Comparison
NZ_CP107131.1 See Comparison
CP136917.1 See Comparison
NZ_CP035126.1 See Comparison
CP125074.1 See Comparison
NZ_CP145642.1 See Comparison
CP124982.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP142934.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_OP378613.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_LR890331.1 See Comparison
NZ_LR890338.1 See Comparison
NZ_AP022167.1 See Comparison
NZ_CP049125.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP116130.1 See Comparison
NZ_CP116139.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP103472.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP103483.1 See Comparison
NZ_CP091708.1 See Comparison
NZ_CP091687.1 See Comparison
CP088759.1 See Comparison
AP024698.1 See Comparison
NZ_CP071078.1 See Comparison
NZ_CP014318.1 See Comparison
CP088455.1 See Comparison
NC_022649.1 See Comparison
NZ_LR130561.1 See Comparison
CP136917.1 See Comparison
NZ_CP034960.1 See Comparison
NZ_CP035126.1 See Comparison
NZ_CP024722.1 See Comparison
NZ_CP107131.1 See Comparison
NZ_CP145642.1 See Comparison
CP125074.1 See Comparison
CP124982.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP142934.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_AP022167.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_LR890331.1 See Comparison
NZ_LR890338.1 See Comparison
NZ_CP049125.1 See Comparison
NZ_CP116130.1 See Comparison
NZ_OP378613.1 See Comparison
NZ_CP116139.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP103472.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP103483.1 See Comparison
NZ_CP091708.1 See Comparison
NZ_CP091687.1 See Comparison
NZ_LR130561.1 See Comparison
NZ_CP034960.1 See Comparison
NZ_CP035126.1 See Comparison
NZ_CP024722.1 See Comparison
CP088759.1 See Comparison
CP088455.1 See Comparison
AP024698.1 See Comparison
NZ_CP071078.1 See Comparison
NZ_CP014318.1 See Comparison
NZ_CP008716.1 See Comparison
NC_022649.1 See Comparison
CP136917.1 See Comparison
CP125074.1 See Comparison
NZ_CP107131.1 See Comparison
CP124982.1 See Comparison
NZ_CP145642.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_CP142934.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP103472.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_LR890331.1 See Comparison
NZ_LR890338.1 See Comparison
NZ_OP378613.1 See Comparison
NZ_CP116130.1 See Comparison
NZ_CP116139.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_AP022167.1 See Comparison
NZ_CP049125.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP103483.1 See Comparison
NZ_CP071078.1 See Comparison
CP088759.1 See Comparison
CP088455.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP091708.1 See Comparison
NZ_CP091687.1 See Comparison
AP024698.1 See Comparison
NZ_CP107131.1 See Comparison
NZ_LR130561.1 See Comparison
NZ_CP034960.1 See Comparison
NZ_CP035126.1 See Comparison
NZ_CP024722.1 See Comparison
CP136917.1 See Comparison
NZ_CP014318.1 See Comparison
NC_022649.1 See Comparison
NZ_CP145642.1 See Comparison
CP125074.1 See Comparison
CP124982.1 See Comparison
NZ_CP145686.1 See Comparison
NZ_AP027568.1 See Comparison
NZ_AP027560.1 See Comparison
NZ_CP056331.1 See Comparison
NZ_CP142934.1 See Comparison
NZ_CP041341.1 See Comparison
NZ_CP053249.1 See Comparison
NZ_CP069870.1 See Comparison
NZ_CP069983.1 See Comparison
NZ_CP070013.1 See Comparison
NZ_CP070114.1 See Comparison
NZ_LR890331.1 See Comparison
NZ_LR890338.1 See Comparison
NZ_AP022167.1 See Comparison
NZ_OP378613.1 See Comparison
NZ_CP049125.1 See Comparison
NZ_CP116130.1 See Comparison
NZ_CP116139.1 See Comparison
NZ_CP103472.1 See Comparison
NZ_CP113490.1 See Comparison
NZ_CP103525.1 See Comparison
NZ_CP103483.1 See Comparison
CP088759.1 See Comparison
NZ_CP091759.1 See Comparison
NZ_CP091708.1 See Comparison
NZ_CP091687.1 See Comparison
CP088455.1 See Comparison
AP024698.1 See Comparison
NZ_CP071078.1 See Comparison
NZ_CP014318.1 See Comparison
NC_022649.1 See Comparison
NZ_LR130561.1 See Comparison
NZ_CP034960.1 See Comparison
NZ_CP035126.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore