Plasmid NZ_CP145638.1

Sequence

Nucleotide Information

Accession	NZ_CP145638.1
Description	Escherichia coli strain S1-ISR-02-A plasmid p2-S1-ISR-02-A, complete sequence
Source	refseq
Topology	circular
Length	86191 bp
GC Content	0.50 %
Created at NCBI	April 5, 2024

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Biosample

Curated Collection Information

Accession	33052311

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	46.947928N;7.422277E
Original Query Type	coordinates
Coordinates (Lat/Lon)	46.95/7.42
Address	Inselspital, 18, Freiburgstrasse, Holligen, Stadtteil III, Bern, Bern-Mittelland administrative district, Bernese Mittelland administrative region, Bern, 3010, Switzerland

ECOSYSTEM

Original Query	Homo sapiens,stool
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Gut colonization
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_KX246268.1	See Comparison
NZ_KJ866866.1	See Comparison
NZ_KP987217.1	See Comparison
CP050747.1	See Comparison
NZ_CP019358.1	See Comparison
NZ_AP022037.1	See Comparison
NZ_CP116096.1	See Comparison
NZ_CP103772.1	See Comparison
NZ_CP101556.1	See Comparison
NZ_CP045527.1	See Comparison
NZ_CP060887.1	See Comparison
NZ_CP060910.1	See Comparison
NZ_CP060904.1	See Comparison
NZ_CP082793.1	See Comparison
NZ_CP085700.1	See Comparison
NZ_CP085621.1	See Comparison
NZ_CP082826.1	See Comparison
NZ_CP074429.1	See Comparison
LC567065.1	See Comparison
NZ_CP135648.1	See Comparison
NZ_CP122501.1	See Comparison
LC567063.1	See Comparison
CP056650.1	See Comparison
NZ_KX246268.1	See Comparison
NZ_KP987217.1	See Comparison
NZ_CP019358.1	See Comparison
NZ_KJ866866.1	See Comparison
CP050747.1	See Comparison
NZ_AP022037.1	See Comparison
NZ_CP116096.1	See Comparison
NZ_CP060910.1	See Comparison
NZ_CP103772.1	See Comparison
NZ_CP101556.1	See Comparison
NZ_CP045527.1	See Comparison
NZ_CP060904.1	See Comparison
NZ_CP060887.1	See Comparison
NZ_CP122501.1	See Comparison
NZ_CP085700.1	See Comparison
NZ_CP085621.1	See Comparison
NZ_CP082793.1	See Comparison
NZ_CP082826.1	See Comparison
NZ_CP074429.1	See Comparison
NZ_CP135648.1	See Comparison
CP056650.1	See Comparison
LC567065.1	See Comparison
LC567063.1	See Comparison
NZ_KX246268.1	See Comparison
CP050747.1	See Comparison
NZ_KJ866866.1	See Comparison
NZ_KP987217.1	See Comparison
NZ_CP103772.1	See Comparison
NZ_CP019358.1	See Comparison
NZ_CP116096.1	See Comparison
NZ_AP022037.1	See Comparison
NZ_CP101556.1	See Comparison
NZ_CP045527.1	See Comparison
NZ_CP082793.1	See Comparison
NZ_CP060910.1	See Comparison
NZ_CP060904.1	See Comparison
NZ_CP060887.1	See Comparison
NZ_CP085700.1	See Comparison
NZ_CP085621.1	See Comparison
NZ_CP082826.1	See Comparison
NZ_CP145638.1	See Comparison
NZ_CP074429.1	See Comparison
NZ_CP135648.1	See Comparison
NZ_CP122501.1	See Comparison
NZ_KP987217.1	See Comparison
NZ_KX246268.1	See Comparison
LC567065.1	See Comparison
LC567063.1	See Comparison
CP056650.1	See Comparison
NZ_KJ866866.1	See Comparison
CP050747.1	See Comparison
NZ_CP019358.1	See Comparison
NZ_CP060910.1	See Comparison
NZ_CP116096.1	See Comparison
NZ_CP101556.1	See Comparison
NZ_AP022037.1	See Comparison
NZ_CP103772.1	See Comparison
NZ_CP045527.1	See Comparison
NZ_CP060904.1	See Comparison
NZ_CP060887.1	See Comparison
NZ_CP085700.1	See Comparison
NZ_CP085621.1	See Comparison
NZ_CP074429.1	See Comparison
NZ_CP082793.1	See Comparison
NZ_CP082826.1	See Comparison
CP056650.1	See Comparison
NZ_CP135648.1	See Comparison
NZ_CP122501.1	See Comparison
LC567065.1	See Comparison
LC567063.1	See Comparison
NZ_KJ866866.1	See Comparison
NZ_KX246268.1	See Comparison
NZ_KP987217.1	See Comparison
NZ_CP103772.1	See Comparison
CP050747.1	See Comparison
NZ_AP022037.1	See Comparison
NZ_CP116096.1	See Comparison
NZ_CP101556.1	See Comparison
NZ_CP045527.1	See Comparison
NZ_KX246268.1	See Comparison
NZ_CP060887.1	See Comparison
NZ_CP085700.1	See Comparison
NZ_CP085621.1	See Comparison
NZ_CP082793.1	See Comparison
NZ_CP082826.1	See Comparison
NZ_CP074429.1	See Comparison
NZ_CP135648.1	See Comparison
NZ_CP122501.1	See Comparison
LC567065.1	See Comparison
LC567063.1	See Comparison
CP056650.1	See Comparison
NZ_CP019358.1	See Comparison
NZ_CP060910.1	See Comparison
NZ_CP060904.1	See Comparison
NZ_KP987217.1	See Comparison
NZ_KJ866866.1	See Comparison
NZ_CP103772.1	See Comparison
CP050747.1	See Comparison
NZ_AP022037.1	See Comparison
NZ_CP116096.1	See Comparison
NZ_CP019358.1	See Comparison
NZ_CP045527.1	See Comparison
NZ_CP101556.1	See Comparison
NZ_CP074429.1	See Comparison
NZ_CP060910.1	See Comparison
NZ_CP060904.1	See Comparison
NZ_CP085700.1	See Comparison
NZ_CP085621.1	See Comparison
NZ_CP082793.1	See Comparison
NZ_CP082826.1	See Comparison
NZ_CP060887.1	See Comparison
NZ_CP135648.1	See Comparison
NZ_CP122501.1	See Comparison
LC567065.1	See Comparison
LC567063.1	See Comparison
CP056650.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore