Plasmid NZ_KJ866866.1

Sequence

Nucleotide Information

Accession NZ_KJ866866.1
Description Escherichia coli strain SKLX3330 plasmid pSKLX3330, complete sequence
Source refseq
Topology circular
Length 89672 bp
GC Content 0.50 %
Created at NCBI June 3, 2020



Biosample

Curated Collection Information
Accession 14226847

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China
Original Query Type name
Coordinates (Lat/Lon) 34.41/86.03
Address China

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_CP060910.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_CP074429.1 See Comparison
LC567065.1 See Comparison
NZ_CP135648.1 See Comparison
LC567063.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP145638.1 See Comparison
CP056650.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_KP987217.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP135648.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP145638.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
NZ_KX246268.1 See Comparison
CP056650.1 See Comparison
NZ_KP987217.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_CP135648.1 See Comparison
CP056650.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP145638.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
NZ_KP987217.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_CP135648.1 See Comparison
NZ_CP145638.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
CP056650.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_KP987217.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP135648.1 See Comparison
LC567065.1 See Comparison
NZ_CP145638.1 See Comparison
LC567063.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_KP987217.1 See Comparison
NZ_CP103772.1 See Comparison
CP056650.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_CP145638.1 See Comparison
NZ_CP135648.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
NZ_KP987217.1 See Comparison
CP056650.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_CP145638.1 See Comparison
NZ_CP135648.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
NZ_KP987217.1 See Comparison
CP056650.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_CP116096.1 See Comparison


Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaCTX-M-55copy
PGAGrepAcopy
PGAGconjugal transfer protein TraAcopy
PGAGtranscription termination/antitermination NusG family proteincopy
PGAGconjugal transfer protein TraCcopy
PGAGhypothetical proteincopy
PGAGPilI type IV pilus biogenesis proteincopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGpilLcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 110 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
repliconKX246268IncI1/B/O11032minus10010001906
repliconCP042618_00163rep_cluster_23718953889672plus94.0741002.72e-50206
relaxaseNC_019097MOBP5310855801minus94.8789901678
mate-pair-formationNC_019097_00085MPF_I2352324338plus1001004.32e-178550
mate-pair-formationNZ_CM001473_00069MPF_I3021430558plus91.3791001.6699999999999998e-54189
mate-pair-formationNC_022267_00069MPF_I3055831205plus99.074915.71e-143448
mate-pair-formationNC_019097_00075MPF_I3126132241plus99.6941000655
mate-pair-formationNC_015965_00072MPF_I3353634237plus1001006.33e-154479
mate-pair-formationNC_023290_00086MPF_I3424034764plus99.4291003.4000000000000003e-100322
mate-pair-formationNC_019111_00038MPF_I3481835195plus96.032941.72e-44161
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 13 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2