Plasmid NZ_CP082826.1

Sequence

Nucleotide Information

Accession NZ_CP082826.1
Description Escherichia coli strain SCAID URN1-2021 (19/278) plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 86164 bp
GC Content 0.50 %
Created at NCBI Sept. 10, 2021



Assembly

Genome Data Information

Accession GCF_019915505.1
Assembly Coverage 362


Biosample

Curated Collection Information
Accession 20982449

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 43.23N;76.88E
Original Query Type coordinates
Coordinates (Lat/Lon) 43.23/76.88
Address 90А, Satbaev, Микрорайоны, Bostandıq District, Almaty, 050035, Kazakhstan

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query pyelonephritis
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP135648.1 See Comparison
NZ_CP122501.1 See Comparison
NZ_CP145638.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
CP056650.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_KP987217.1 See Comparison
CP050747.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP101556.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP145638.1 See Comparison
NZ_CP122501.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP135648.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_KP987217.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
CP056650.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_CP101556.1 See Comparison
CP050747.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP135648.1 See Comparison
NZ_CP122501.1 See Comparison
LC567065.1 See Comparison
NZ_CP145638.1 See Comparison
LC567063.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_KX246268.1 See Comparison
CP056650.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_KP987217.1 See Comparison
CP050747.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP101556.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_CP135648.1 See Comparison
CP056650.1 See Comparison
NZ_CP122501.1 See Comparison
NZ_CP145638.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_KP987217.1 See Comparison
NZ_CP019358.1 See Comparison
CP050747.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP101556.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
CP050747.1 See Comparison
NZ_CP135648.1 See Comparison
CP056650.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP122501.1 See Comparison
NZ_CP145638.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_KP987217.1 See Comparison
NZ_CP101556.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_CP116096.1 See Comparison
LC567065.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP135648.1 See Comparison
NZ_CP122501.1 See Comparison
NZ_CP145638.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP082793.1 See Comparison
LC567063.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_KP987217.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_CP116096.1 See Comparison
CP056650.1 See Comparison
NZ_KX246268.1 See Comparison
CP050747.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP101556.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP074429.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore