Plasmid NZ_CP082826.1
Sequence
Nucleotide Information
| Accession | NZ_CP082826.1 |
|---|---|
| Description | Escherichia coli strain SCAID URN1-2021 (19/278) plasmid unnamed2, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 86164 bp |
| GC Content | 0.50 % |
| Created at NCBI | Sept. 10, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 20982449 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 43.23N;76.88E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 43.23/76.88 |
| Address | 90А, Satbaev, Микрорайоны, Bostandıq District, Almaty, 050035, Kazakhstan |
ECOSYSTEM
| Original Query | Homo sapiens,urine |
|---|---|
| Classification | host_associated,urinary_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | pyelonephritis |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | HM021326 | MOBP | 22032 | 22124 | plus | 100 | 100 | 4.37e-41 | 172 |
| replicon | KX246268 | IncI1/B/O | 52029 | 53060 | minus | 100 | 100 | 0 | 1906 |
| mate-pair-formation | NC_019111_00038 | MPF_I | 679 | 1056 | plus | 96.032 | 94 | 1.72e-44 | 161 |
| relaxase | NC_019097 | MOBP | 18969 | 21662 | minus | 94.878 | 99 | 0 | 1678 |
| mate-pair-formation | NC_023290_00086 | MPF_I | 101 | 625 | plus | 99.429 | 100 | 3.1500000000000003e-100 | 322 |
| mate-pair-formation | NC_022267_00057 | MPF_I | 5834 | 7033 | plus | 99.25 | 100 | 0 | 769 |
| mate-pair-formation | NC_019097_00056 | MPF_I | 16635 | 18896 | plus | 98.674 | 92 | 0 | 1444 |
| mate-pair-formation | NC_019097_00085 | MPF_I | 75547 | 76362 | plus | 100 | 100 | 4.32e-178 | 550 |
| mate-pair-formation | NZ_CM001473_00069 | MPF_I | 82239 | 82583 | plus | 91.379 | 100 | 1.6699999999999998e-54 | 189 |
| mate-pair-formation | NC_022267_00069 | MPF_I | 82583 | 83230 | plus | 99.074 | 91 | 5.7e-143 | 448 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |