Plasmid NZ_CP116096.1

Sequence

Nucleotide Information

Accession NZ_CP116096.1
Description Escherichia coli strain DETEC-S560 plasmid pDETEC69, complete sequence
Source refseq
Topology circular
Length 86167 bp
GC Content 0.50 %
Created at NCBI Jan. 25, 2023



Assembly

Genome Data Information

Accession GCF_027944675.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 31988492

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Guangzhou
Original Query Type name
Coordinates (Lat/Lon) 23.13/113.26
Address China,Guangzhou

ECOSYSTEM
Original Query whole organism,ICU staff rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP135648.1 See Comparison
NZ_CP122501.1 See Comparison
NZ_CP145638.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
CP056650.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_KP987217.1 See Comparison
CP050747.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP101556.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_CP135648.1 See Comparison
NZ_CP122501.1 See Comparison
CP056650.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
NZ_CP145638.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_KP987217.1 See Comparison
CP050747.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP101556.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP122501.1 See Comparison
NZ_CP135648.1 See Comparison
CP056650.1 See Comparison
NZ_CP145638.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
NZ_KP987217.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_AP022037.1 See Comparison
CP050747.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP101556.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP145638.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP135648.1 See Comparison
NZ_CP122501.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
NZ_KJ866866.1 See Comparison
CP056650.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_KP987217.1 See Comparison
CP050747.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP122501.1 See Comparison
NZ_CP116096.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP135648.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP101556.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP145638.1 See Comparison
NZ_CP101556.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
CP056650.1 See Comparison
NZ_KX246268.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_KP987217.1 See Comparison
CP050747.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison
CP056650.1 See Comparison
NZ_CP135648.1 See Comparison
NZ_CP145638.1 See Comparison
NZ_CP122501.1 See Comparison
LC567065.1 See Comparison
LC567063.1 See Comparison
NZ_KX246268.1 See Comparison
CP050747.1 See Comparison
NZ_KJ866866.1 See Comparison
NZ_KP987217.1 See Comparison
NZ_CP019358.1 See Comparison
NZ_CP060910.1 See Comparison
NZ_AP022037.1 See Comparison
NZ_CP103772.1 See Comparison
NZ_CP101556.1 See Comparison
NZ_CP045527.1 See Comparison
NZ_CP060904.1 See Comparison
NZ_CP060887.1 See Comparison
NZ_CP085700.1 See Comparison
NZ_CP085621.1 See Comparison
NZ_CP074429.1 See Comparison
NZ_CP082793.1 See Comparison
NZ_CP082826.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore