Plasmid NZ_CP103772.1
Sequence
Nucleotide Information
| Accession | NZ_CP103772.1 |
|---|---|
| Description | Salmonella enterica strain S1905 plasmid pS1905_1, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 85991 bp |
| GC Content | 0.50 % |
| Created at NCBI | Sept. 5, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (28901) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 30507085 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | China,Hangzhou |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 30.25/120.21 |
| Address | China,Hangzhou |
ECOSYSTEM
| Original Query | Homo sapiens |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
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B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | blaCTX-M-55 | copy | ||
| PGAG | repA | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | ProQ/FINO family protein | copy | ||
| PGAG | IS1380-like element ISEcp1 family transposase | copy | ||
| PGAG | extended-spectrum class A beta-lactamase CTX-M-55 | copy | ||
| PGAG | yagA | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | ParA family plasmid-partitioning AAA ATPase | copy | ||
| PGAG | Y-family DNA polymerase | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 108 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | KX246268 | IncI1/B/O | 1 | 1032 | plus | 100 | 100 | 0 | 1906 |
| relaxase | NC_019097 | MOBP | 31431 | 34124 | plus | 94.878 | 99 | 0 | 1678 |
| mate-pair-formation | NC_019097_00056 | MPF_I | 34197 | 36458 | minus | 98.674 | 92 | 0 | 1444 |
| mate-pair-formation | NC_022267_00057 | MPF_I | 46060 | 47259 | minus | 99.25 | 100 | 0 | 769 |
| mate-pair-formation | NC_019111_00038 | MPF_I | 52037 | 52414 | minus | 96.032 | 94 | 1.72e-44 | 161 |
| mate-pair-formation | NC_023290_00086 | MPF_I | 52468 | 52992 | minus | 99.429 | 100 | 3.4000000000000003e-100 | 322 |
| mate-pair-formation | NC_015965_00072 | MPF_I | 52995 | 53696 | minus | 100 | 100 | 6.33e-154 | 479 |
| mate-pair-formation | NC_019097_00075 | MPF_I | 54991 | 55971 | minus | 99.694 | 100 | 0 | 655 |
| mate-pair-formation | NC_022267_00069 | MPF_I | 56027 | 56674 | minus | 99.074 | 91 | 5.7e-143 | 448 |
| mate-pair-formation | NZ_CM001473_00069 | MPF_I | 56674 | 57018 | minus | 91.379 | 100 | 1.6699999999999998e-54 | 189 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |