Plasmid NZ_CP135188.1

Sequence

Nucleotide Information

Accession NZ_CP135188.1
Description Klebsiella pneumoniae strain VA585-22 plasmid pVA585-22_226, complete sequence
Source refseq
Topology circular
Length 226716 bp
GC Content 0.50 %
Created at NCBI Oct. 7, 2023



Assembly

Genome Data Information

Accession GCF_032253935.1
Assembly Coverage 138


Biosample

Curated Collection Information

Accession 37513143

PLASMID INFORMATION
BIOSAMPLE_pathotype Hypervirulent

GEOGRAPHICAL INFORMATION
Original Query 33.413828S;70.653481W
Original Query Type coordinates
Coordinates (Lat/Lon) -33.41/-70.65
Address Antiguo Hospital San José, San José, Barrio Einstein, Recoleta, Provincia de Santiago, Santiago Metropolitan Region, 7690000, Chile

ECOSYSTEM
Original Query Homo sapiens,tracheal aspirate,tracheal aspirate
Classification host_associated,respiratory_system,trachea
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 31
Host-associated Sex male

DISEASE
Original Query Klebsiella respiratory infection,pneumonia and mechanical ventilation
DOID/SYMP
  • Pneumonia (DOID:552 )
  • A lung disease that involves lung parenchyma or alveolar inflammation and abnormal alveolar filling with fluid (consolidation and exudation). It results from a variety of causes including infection with bacteria, viruses, fungi or parasites, and chemical or physical injury to the lungs. It is accompanied by fever, chills, cough, and difficulty in breathing.
  • Bacterial infectious disease (DOID:104 )
  • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']
  • Respiratory system disease (DOID:1579 )
  • A disease of anatomical entity that located_in the respiratory system which extends from the nasal sinuses to the diaphragm.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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CP052144.1 See Comparison
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NZ_CP089030.1 See Comparison
NZ_CP088984.1 See Comparison
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CP128655.1 See Comparison
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NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_CP125085.1 See Comparison
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NZ_CP152337.1 See Comparison
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CP052190.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
NZ_CP047678.1 See Comparison
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NZ_AP019549.1 See Comparison
NZ_CP047676.1 See Comparison
NZ_CP026024.1 See Comparison
NZ_CP026012.1 See Comparison
NZ_CP064233.1 See Comparison
NZ_CP069941.1 See Comparison
NZ_CP064230.1 See Comparison
NZ_CP064206.1 See Comparison
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NZ_CP084867.1 See Comparison
NZ_MT269852.1 See Comparison
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NZ_CP151760.1 See Comparison
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CP052163.1 See Comparison
CP052159.1 See Comparison
CP052144.1 See Comparison
CP052563.1 See Comparison
NZ_MG053312.1 See Comparison
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CP052190.1 See Comparison
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CP052204.1 See Comparison
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NZ_CP091059.1 See Comparison
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NZ_CP064233.1 See Comparison
NZ_CP064230.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP063891.1 See Comparison
NZ_CP063278.1 See Comparison
CP046893.1 See Comparison
NZ_CP096243.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP096235.1 See Comparison
CP102436.1 See Comparison
CP067778.1 See Comparison
NZ_AP019549.1 See Comparison
NZ_CP069941.1 See Comparison
NZ_CP118907.1 See Comparison
CP110764.1 See Comparison
NZ_CP027867.1 See Comparison
NZ_CP107015.1 See Comparison
NZ_CP103513.1 See Comparison
NZ_ON081625.1 See Comparison
NZ_CP043581.1 See Comparison
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NZ_CP091062.1 See Comparison
NZ_CP025081.1 See Comparison
NZ_CP089235.1 See Comparison
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NZ_CP064206.1 See Comparison
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NZ_CP063278.1 See Comparison
CP046893.1 See Comparison
NZ_CP047678.1 See Comparison
NZ_CP047676.1 See Comparison
NZ_CP069941.1 See Comparison
NZ_CP118907.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP096235.1 See Comparison
NZ_CP103513.1 See Comparison
NZ_CP107015.1 See Comparison
CP110764.1 See Comparison
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CP102436.1 See Comparison
CP069366.1 See Comparison
CP067778.1 See Comparison
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NZ_CP043581.1 See Comparison
NZ_CP084867.1 See Comparison
NZ_CP091059.1 See Comparison
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NZ_CP089030.1 See Comparison
NZ_CP089023.1 See Comparison
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LR134257.1 See Comparison
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NZ_CP034083.1 See Comparison
NZ_CP125085.1 See Comparison
NZ_CP025081.1 See Comparison
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CP128676.1 See Comparison
CP128659.1 See Comparison
CP128655.1 See Comparison
NZ_CP155642.1 See Comparison
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CP052144.1 See Comparison
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NZ_CP026012.1 See Comparison
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NZ_CP064230.1 See Comparison
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NZ_CP028852.1 See Comparison
NZ_CP063891.1 See Comparison
NZ_CP118907.1 See Comparison
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NZ_CP037743.1 See Comparison
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NZ_CP014011.1 See Comparison
NZ_MT269852.1 See Comparison
NZ_CP025081.1 See Comparison
NZ_CP034083.1 See Comparison
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CP128655.1 See Comparison
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NZ_CP155642.1 See Comparison
NZ_CP152064.1 See Comparison
NZ_CP151754.1 See Comparison
NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_MG053312.1 See Comparison
CP052178.1 See Comparison
CP052163.1 See Comparison
CP052159.1 See Comparison
CP052144.1 See Comparison
CP052563.1 See Comparison
CP052495.1 See Comparison
NZ_CP132622.1 See Comparison
NZ_CP152337.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_CP144338.1 See Comparison
NZ_CP144308.1 See Comparison
CP052357.1 See Comparison
CP052190.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
NZ_CP047678.1 See Comparison
NZ_CP047676.1 See Comparison
NZ_CP064233.1 See Comparison
NZ_CP026024.1 See Comparison
NZ_CP026012.1 See Comparison
NZ_CP069941.1 See Comparison
NZ_MT496757.1 See Comparison
NZ_CP064230.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP063891.1 See Comparison
NZ_CP063278.1 See Comparison
CP110764.1 See Comparison
CP046893.1 See Comparison
NZ_CP096243.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP096235.1 See Comparison
NZ_CP118907.1 See Comparison
NZ_CP027867.1 See Comparison
NZ_ON081625.1 See Comparison
NZ_CP107015.1 See Comparison
NZ_CP103513.1 See Comparison
CP102436.1 See Comparison
NZ_CP073286.1 See Comparison
NZ_CP043581.1 See Comparison
CP069366.1 See Comparison
NZ_CP089235.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_MZ475709.1 See Comparison
NZ_MZ475697.1 See Comparison
NZ_CP084867.1 See Comparison
CP067778.1 See Comparison
NZ_CP091059.1 See Comparison
NZ_CP091062.1 See Comparison
NZ_CP089599.1 See Comparison
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NZ_CP089030.1 See Comparison
NZ_CP025081.1 See Comparison
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NZ_CP034083.1 See Comparison
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NZ_CP136533.1 See Comparison
CP128659.1 See Comparison
CP128655.1 See Comparison
NZ_CP125085.1 See Comparison
NZ_CP122574.1 See Comparison
NZ_CP152337.1 See Comparison
NZ_CP155642.1 See Comparison
NZ_MG053312.1 See Comparison
NZ_CP152064.1 See Comparison
NZ_CP151754.1 See Comparison
NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_CP144338.1 See Comparison
NZ_CP144308.1 See Comparison
NZ_CP026024.1 See Comparison
CP052178.1 See Comparison
CP052163.1 See Comparison
CP052159.1 See Comparison
CP052144.1 See Comparison
CP052563.1 See Comparison
CP052495.1 See Comparison
CP052357.1 See Comparison
CP052190.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
NZ_AP019549.1 See Comparison
NZ_CP047678.1 See Comparison
NZ_CP047676.1 See Comparison
NZ_CP026012.1 See Comparison
NZ_CP064230.1 See Comparison
NZ_CP069941.1 See Comparison
NZ_MT496757.1 See Comparison
NZ_CP064233.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP063891.1 See Comparison
NZ_CP043581.1 See Comparison
NZ_CP063278.1 See Comparison
NZ_CP118907.1 See Comparison
CP046893.1 See Comparison
NZ_CP096243.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP096235.1 See Comparison
NZ_CP027867.1 See Comparison
NZ_CP107015.1 See Comparison
NZ_CP103513.1 See Comparison
CP102436.1 See Comparison
NZ_ON081625.1 See Comparison
CP110764.1 See Comparison
CP069366.1 See Comparison
NZ_CP072493.1 See Comparison
NZ_CP089235.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_CP089599.1 See Comparison
CP089869.1 See Comparison
NZ_CP089030.1 See Comparison
CP067778.1 See Comparison
NZ_CP091059.1 See Comparison
NZ_CP091062.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_MZ475709.1 See Comparison
NZ_MZ475697.1 See Comparison
NZ_CP084867.1 See Comparison
NZ_CP073286.1 See Comparison
NZ_MT269852.1 See Comparison
NC_006625.1 See Comparison
NZ_CP037743.1 See Comparison
LR134257.1 See Comparison
NZ_CP025081.1 See Comparison
NZ_CP014011.1 See Comparison
NZ_CP034083.1 See Comparison
NZ_OR388867.1 See Comparison
NZ_OR388870.1 See Comparison
NZ_CP136533.1 See Comparison
NZ_CP125085.1 See Comparison
CP128659.1 See Comparison
CP128655.1 See Comparison
NZ_CP132622.1 See Comparison
CP128676.1 See Comparison
NZ_CP122574.1 See Comparison
NZ_CP152337.1 See Comparison
NZ_CP155642.1 See Comparison
NZ_CP151754.1 See Comparison
NZ_CP152064.1 See Comparison
NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_CP144338.1 See Comparison
NZ_CP144308.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2