Plasmid NZ_CP103513.1

Sequence

Nucleotide Information

Accession NZ_CP103513.1
Description Klebsiella pneumoniae strain 5531 plasmid pMB9306_1, complete sequence
Source refseq
Topology circular
Length 230429 bp
GC Content 0.50 %
Created at NCBI Sept. 6, 2022



Assembly

Genome Data Information

Accession GCF_024917915.1
Assembly Coverage 111


Biosample

Curated Collection Information
Accession 28174100

PLASMID INFORMATION
Genotype ST23

GEOGRAPHICAL INFORMATION
Original Query 29.7068N;95.3971W
Original Query Type coordinates
Coordinates (Lat/Lon) 29.71/-95.40
Address University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bacteremia
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP025081.1 See Comparison
NZ_CP135188.1 See Comparison
NZ_CP132630.1 See Comparison
NZ_CP132614.1 See Comparison
NZ_CP155642.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_AP019549.1 See Comparison
NZ_CP072493.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_ON081625.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_CP084867.1 See Comparison
NZ_CP063278.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_CP072493.1 See Comparison
NZ_CP135188.1 See Comparison
NZ_CP132630.1 See Comparison
NZ_CP132614.1 See Comparison
NZ_CP155642.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_CP063278.1 See Comparison
NZ_ON081625.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_CP084867.1 See Comparison
NZ_CP025081.1 See Comparison
NZ_AP019549.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_CP132630.1 See Comparison
NZ_CP135188.1 See Comparison
NZ_CP025081.1 See Comparison
NZ_CP132614.1 See Comparison
NZ_CP103513.1 See Comparison
NZ_CP155642.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_AP019549.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP063278.1 See Comparison
NZ_ON081625.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_CP072493.1 See Comparison
NZ_CP084867.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP155642.1 See Comparison
NZ_CP025081.1 See Comparison
NZ_CP135188.1 See Comparison
NZ_CP132630.1 See Comparison
NZ_CP132614.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_CP084867.1 See Comparison
NZ_AP019549.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP063278.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_ON081625.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_CP135188.1 See Comparison
NZ_CP072493.1 See Comparison
NZ_CP025081.1 See Comparison
NZ_ON081625.1 See Comparison
NZ_AP019549.1 See Comparison
NZ_CP132630.1 See Comparison
NZ_CP132614.1 See Comparison
NZ_CP155642.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP063278.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP132630.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_CP084867.1 See Comparison
NZ_CP025081.1 See Comparison
NZ_CP072493.1 See Comparison
NZ_CP135188.1 See Comparison
NZ_CP132614.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_CP155642.1 See Comparison
NZ_CP063278.1 See Comparison
NZ_AP019549.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP025081.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_CP084867.1 See Comparison
NZ_ON081625.1 See Comparison
NZ_CP072493.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP135188.1 See Comparison
NZ_CP132630.1 See Comparison
NZ_CP132614.1 See Comparison
NZ_CP155642.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_AP019549.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP063278.1 See Comparison
NZ_ON081625.1 See Comparison
NZ_CP084867.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_CP072493.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2