Plasmid NZ_CP091062.1

Sequence

Nucleotide Information

Accession NZ_CP091062.1
Description Klebsiella pneumoniae strain KP29105 plasmid pKP29105-1, complete sequence
Source refseq
Topology circular
Length 229582 bp
GC Content 0.50 %
Created at NCBI Jan. 21, 2022



Assembly

Genome Data Information

Accession GCF_021535085.1
Assembly Coverage 58


Biosample

Curated Collection Information
Accession 24562924

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 40.22N;116.23E
Original Query Type coordinates
Coordinates (Lat/Lon) 40.22/116.23
Address 正楼, 政府街, 昌园社区, Chengnan, Erjie, Changping District, Beijing, 102200, China

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query COPD
DOID/SYMP
  • Chronic obstructive pulmonary disease (DOID:3083 )
    • An obstructive lung disease that is a chronic and progressive disorder of small airways in the lungs and that is characterized by irreversible airflow obstruction, typically identified by reductions in quantitative spirometric indices, induced forced expiratory volume at 1 second (FEV1) and the ratio of FEV1 to forced vital capacity (less than 0.7 is diagnostic of COPD). Lung volume is increased and pulmonary hypertension may occur. The pathologic changes result in the disruption of the airflow in the bronchial airways. Signs and symptoms include shortness of breath, wheezing, productive cough and chest tightness. COPD is a consequence (an end result) of chronic bronchitis, emphysema or both.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP151760.1 See Comparison
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NZ_CP152064.1 See Comparison
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NZ_CP151757.1 See Comparison
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CP128655.1 See Comparison
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NZ_CP122574.1 See Comparison
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NZ_CP151757.1 See Comparison
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CP052178.1 See Comparison
CP052163.1 See Comparison
CP052159.1 See Comparison
CP052144.1 See Comparison
CP052563.1 See Comparison
CP052495.1 See Comparison
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NZ_CP144308.1 See Comparison
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CP052190.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
NZ_CP047678.1 See Comparison
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NZ_CP026012.1 See Comparison
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NZ_CP064230.1 See Comparison
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NZ_CP028852.1 See Comparison
NZ_CP063891.1 See Comparison
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NZ_CP144338.1 See Comparison
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NZ_CP144314.1 See Comparison
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CP052163.1 See Comparison
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CP052304.1 See Comparison
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NZ_CP026012.1 See Comparison
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NZ_CP064233.1 See Comparison
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NZ_CP063278.1 See Comparison
CP046893.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP063891.1 See Comparison
NZ_CP118907.1 See Comparison
NZ_CP096243.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP096235.1 See Comparison
NZ_CP107015.1 See Comparison
NZ_CP027867.1 See Comparison
NZ_CP072493.1 See Comparison
NZ_ON081625.1 See Comparison
CP067778.1 See Comparison
NZ_CP091059.1 See Comparison
NZ_CP089599.1 See Comparison
CP089869.1 See Comparison
CP089860.1 See Comparison
NZ_CP089030.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_CP073286.1 See Comparison
NZ_MT269852.1 See Comparison
CP102436.1 See Comparison
NZ_CP043581.1 See Comparison
CP069366.1 See Comparison
NZ_CP089235.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_MZ475709.1 See Comparison
NZ_MZ475703.1 See Comparison
NZ_MZ475697.1 See Comparison
NZ_CP084867.1 See Comparison
LR134257.1 See Comparison
NZ_CP019049.1 See Comparison
NZ_CP014011.1 See Comparison
NZ_CP014009.1 See Comparison
NZ_CP037743.1 See Comparison
NZ_CP034083.1 See Comparison
NZ_CP025081.1 See Comparison
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NZ_MG053312.1 See Comparison
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NZ_OR388870.1 See Comparison
NZ_CP125085.1 See Comparison
NZ_CP122574.1 See Comparison
NZ_CP155642.1 See Comparison
NZ_CP152337.1 See Comparison
NZ_CP152064.1 See Comparison
NZ_CP144360.1 See Comparison
NZ_CP135188.1 See Comparison
NZ_CP132684.1 See Comparison
NZ_CP132630.1 See Comparison
NZ_CP132614.1 See Comparison
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CP128659.1 See Comparison
CP128655.1 See Comparison
NZ_CP151754.1 See Comparison
NZ_CP151760.1 See Comparison
NZ_CP151757.1 See Comparison
NZ_CP144338.1 See Comparison
NZ_CP144308.1 See Comparison
NZ_CP144314.1 See Comparison
CP052190.1 See Comparison
CP052178.1 See Comparison
CP052563.1 See Comparison
CP052304.1 See Comparison
CP052204.1 See Comparison
CP052163.1 See Comparison
NZ_CP026024.1 See Comparison
CP052159.1 See Comparison
CP052144.1 See Comparison
NZ_AP019549.1 See Comparison
NZ_CP047678.1 See Comparison
NZ_CP047676.1 See Comparison
CP052495.1 See Comparison
CP052357.1 See Comparison
NZ_CP026012.1 See Comparison
NZ_CP064230.1 See Comparison
NZ_CP069941.1 See Comparison
NZ_CP064206.1 See Comparison
NZ_CP028852.1 See Comparison
NZ_CP063891.1 See Comparison
NZ_CP118907.1 See Comparison
NZ_CP064233.1 See Comparison
NZ_MT496757.1 See Comparison
NZ_CP063278.1 See Comparison
NZ_CP096243.1 See Comparison
CP046893.1 See Comparison
NZ_CP096239.1 See Comparison
NZ_CP096235.1 See Comparison
CP067778.1 See Comparison
NZ_CP027867.1 See Comparison
NZ_ON081625.1 See Comparison
NZ_CP043581.1 See Comparison
CP110764.1 See Comparison
NZ_CP107015.1 See Comparison
CP102436.1 See Comparison
CP069366.1 See Comparison
NZ_CP091059.1 See Comparison
NZ_CP089599.1 See Comparison
NZ_CP089235.1 See Comparison
CP089869.1 See Comparison
CP089860.1 See Comparison
NZ_CP090243.1 See Comparison
NZ_MZ475709.1 See Comparison
NZ_CP089030.1 See Comparison
NZ_CP089023.1 See Comparison
NZ_CP088984.1 See Comparison
NZ_MZ475703.1 See Comparison
NZ_MZ475697.1 See Comparison
NZ_CP084867.1 See Comparison
NZ_CP019049.1 See Comparison
NZ_CP073286.1 See Comparison
NZ_MT269852.1 See Comparison
NZ_CP072493.1 See Comparison
NZ_CP014011.1 See Comparison
NZ_CP014009.1 See Comparison
NZ_CP037743.1 See Comparison
LR134257.1 See Comparison
NZ_CP034083.1 See Comparison
NZ_CP025081.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Biosynthetic Gene Clusters

based on ANTISMASH

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore