Plasmid NZ_CP063278.1
Sequence
Nucleotide Information
| Accession | NZ_CP063278.1 |
|---|---|
| Description | Klebsiella pneumoniae strain MAR14-456 plasmid pMAR14456-IncHI1B, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 232362 bp |
| GC Content | 0.50 % |
| Created at NCBI | Oct. 30, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 16386297 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 55.8N;37.6E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 55.80/37.60 |
| Address | Полковая улица, Maryina Roshcha District, Moscow, Central Federal District, 127018, Russia |
ECOSYSTEM
| Original Query | Homo sapiens,Postoperative wound |
|---|---|
| Classification | host_associated,wound |
| Host-associated Taxon |
|
DISEASE
| Original Query | Sepsis |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | pcoB | copy | ||
| amrfinderplus | pcoA | copy | ||
| amrfinderplus | silC | copy | ||
| amrfinderplus | terE | copy | ||
| amrfinderplus | terD | copy | ||
| amrfinderplus | terB | copy | ||
| amrfinderplus | terC | copy | ||
| amrfinderplus | silB | copy | ||
| amrfinderplus | silA | copy | ||
| amrfinderplus | iroD | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 208 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AB011549.2 | amrfinderplus | 2024-01-31.1 | toxB | toxin B | 55981 | 65487 | -1 | + | 100.0 | 100.0 | ||
| AB011549.2 | amrfinderplus | 2024-01-31.1 | katP | catalase/peroxidase KatP | 76888 | 79095 | -1 | + | 100.0 | 100.0 | ||
| AB011549.2 | amrfinderplus | 2024-01-31.1 | ehxA | enterohemolysin EhxA | 16612 | 19605 | -1 | + | 100.0 | 100.0 | ||
| AB011549.2 | amrfinderplus | 2024-01-31.1 | espP | serine protease autotransporter EspP | 80757 | 84656 | -1 | + | 100.0 | 100.0 | ||
| AB576781.2 | amrfinderplus | 2024-01-31.1 | qacEdelta1 | quaternary ammonium compound efflux SMR transporter QacE delta 1 | QUATERNARY AMMONIUM | QUATERNARY AMMONIUM | 16844 | 17188 | -1 | - | 100.0 | 100.0 |
| AB576781.2 | amrfinderplus | 2024-01-31.1 | blaTEM-1 | broad-spectrum class A beta-lactamase TEM-1 | BETA-LACTAM | BETA-LACTAM | 28587 | 29444 | -1 | - | 100.0 | 100.0 |
| AB576781.2 | amrfinderplus | 2024-01-31.1 | aph(3')-Ia | aminoglycoside O-phosphotransferase APH(3')-Ia | AMINOGLYCOSIDE | KANAMYCIN | 5065 | 5877 | -1 | + | 100.0 | 100.0 |
| AB576781.2 | amrfinderplus | 2024-01-31.1 | tet(A) | tetracycline efflux MFS transporter Tet(A) | TETRACYCLINE | TETRACYCLINE | 9712 | 10908 | -1 | - | 100.0 | 100.0 |
| AB576781.2 | rgi | 3.2.9 | aadA | ANT(3'') | aminoglycoside antibiotic | 17352 | 18131 | -1 | - | 99.61 | 98.48 | |
| AB576781.2 | amrfinderplus | 2024-01-31.1 | aadA1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1 | AMINOGLYCOSIDE | STREPTOMYCIN | 17355 | 18143 | -1 | - | 100.0 | 100.0 |
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Showing 1 to 10 of 250,691 entries (filtered from 251,138 total entries)
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Biosynthetic Gene Clusters
based on ANTISMASH
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| AB000510.1 | non-mobilizable | AD045 | AM462 | Candidatus Phytoplasma | 0.0 | |||||
| AB011548.2 | rep_cluster_2350 | MOBF | MOB_unknown | mobilizable | AA667 | AI941 | Actinomycetota,Bacillota,Bacteroidota,Pseudomonadota | 0.0 | genus | |
| AB011549.2 | IncFIA,IncFIB | non-mobilizable | AA345 | AI296 | Enterobacterales | 0.0 | order | |||
| AB063523.1 | rep_cluster_1526 | non-mobilizable | AE201 | AN929 | Wigglesworthia | 0.0 | ||||
| AB244976.1 | rep_cluster_1617 | MOBP | MPF_T | MOBQ | conjugative | AC441 | AL633 | Sphingomonadaceae | 0.00940624 | |
| AB576781.2 | IncFII | MOBF | MPF_F | conjugative | AB460 | AK247 | Enterobacterales | 0.0 | family | |
| AB605179.1 | IncFIB,IncFII | MOBF | MPF_F | conjugative | AB460 | AK247 | Enterobacterales | 0.0 | order | |
| ADWM02000138.1 | non-mobilizable | AF844 | AP846 | Neisseria | 0.00058191 | |||||
| ADWN02000004.1 | non-mobilizable | AF844 | AP846 | Neisseria | 0.00058191 | |||||
| AE006471.2 | IncFIB,IncFII | MOBF | MPF_F | conjugative | AB460 | AK247 | Enterobacterales | 0.0 | order | |
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
Showing 1 to 10 of 72,360 entries (filtered from 72,556 total entries)
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BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000107__CP014778_00094 | IncFIB | 1 | 1011 | plus | 99.604 | 100 | 0 | 1845 |
| replicon | JN420336 | IncHI1B | 212506 | 212978 | minus | 99.154 | 83 | 0 | 852 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| AB011548.2 | ColRNAI | 87.02 | 100.0 | 2675 | 2805 | plus | Enterobacteriales | enterobacteriales |
| AB011549.2 | IncFII | 96.17 | 99.23 | 72300 | 72558 | plus | Enterobacteriales | enterobacteriales |
| AB011549.2 | IncFIB(AP001918) | 98.24 | 100.0 | 25716 | 26397 | plus | Enterobacteriales | enterobacteriales |
| AB576781.2 | IncFII(S) | 100.0 | 100.0 | 111401 | 111662 | plus | Enterobacteriales | enterobacteriales |
| AB576781.2 | IncFII(pAR0022) | 85.29 | 98.42 | 111685 | 112119 | plus | Enterobacteriales | enterobacteriales |
| AB605179.1 | IncFII(S) | 100.0 | 100.0 | 131573 | 131834 | plus | Enterobacteriales | enterobacteriales |
| AB605179.1 | IncFIB(AP001918) | 98.39 | 100.0 | 20534 | 21215 | plus | Enterobacteriales | enterobacteriales |
| AB605179.1 | IncFII(pAR0022) | 85.29 | 98.42 | 131857 | 132291 | plus | Enterobacteriales | enterobacteriales |
| AE006471.2 | IncFIB(S) | 100.0 | 100.0 | 17011 | 17653 | plus | Enterobacteriales | enterobacteriales |
| AE006471.2 | IncFII(S) | 100.0 | 100.0 | 1665 | 1926 | plus | Enterobacteriales | enterobacteriales |
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
Showing 1 to 10 of 60,619 entries
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