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v. 2024_05_31_v2
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Antimicrobial Resistance Genes
Typing
Plasmid NZ_CP124411.1
Sequence
Nucleotide Information
Accession
NZ_CP124411.1
Description
Escherichia coli strain AVS0543 plasmid pAVS0543-A, complete sequence
Source
refseq
Topology
circular
Length
135326 bp
GC Content
0.52 %
Created at NCBI
May 21, 2023
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_030039375.1
Assembly Coverage
None
Biosample
Curated Collection Information
Accession
34360976
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Switzerland,Kanton Zug
Original Query Type
name
Coordinates (Lat/Lon)
47.15/8.55
Address
Switzerland,Kanton Zug
ECOSYSTEM
Original Query
environmental: river near WWTP effluent
Classification
aquatic,freshwater,river
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP124413.1
NZ_CP124414.1
NZ_CP124412.1
Similar Plasmids
based on Mash distance
NZ_CP124393.1
See Comparison
NZ_CP124416.1
See Comparison
NZ_CP051616.1
See Comparison
NZ_MG886288.1
See Comparison
NZ_CP124416.1
See Comparison
NZ_LC520270.1
See Comparison
NZ_LC520281.1
See Comparison
NZ_LC520285.1
See Comparison
NZ_LC520283.1
See Comparison
NZ_CP021871.1
See Comparison
NZ_CP021180.1
See Comparison
NZ_CP124393.1
See Comparison
NZ_AP022065.1
See Comparison
NZ_MK295830.1
See Comparison
NZ_MK295819.1
See Comparison
NZ_LC520287.1
See Comparison
NZ_CP103593.1
See Comparison
CP088716.1
See Comparison
CP088599.1
See Comparison
NZ_CP051616.1
See Comparison
NZ_MG886288.1
See Comparison
NZ_AP022065.1
See Comparison
NZ_MK295830.1
See Comparison
NZ_LC520270.1
See Comparison
NZ_LC520281.1
See Comparison
NZ_LC520285.1
See Comparison
NZ_MK295819.1
See Comparison
NZ_LC520287.1
See Comparison
CP088716.1
See Comparison
NZ_CP103593.1
See Comparison
NZ_LC520283.1
See Comparison
CP088599.1
See Comparison
NZ_CP021871.1
See Comparison
NZ_CP021180.1
See Comparison
NZ_CP124416.1
See Comparison
NZ_CP124393.1
See Comparison
NZ_CP051616.1
See Comparison
NZ_MG886288.1
See Comparison
NZ_AP022065.1
See Comparison
NZ_MK295830.1
See Comparison
NZ_LC520285.1
See Comparison
NZ_MG886288.1
See Comparison
NZ_LC520283.1
See Comparison
NZ_CP103593.1
See Comparison
CP088716.1
See Comparison
CP088599.1
See Comparison
NZ_CP021871.1
See Comparison
NZ_CP021180.1
See Comparison
NZ_CP124416.1
See Comparison
NZ_MK295819.1
See Comparison
NZ_LC520287.1
See Comparison
NZ_LC520270.1
See Comparison
NZ_LC520281.1
See Comparison
NZ_CP124393.1
See Comparison
NZ_CP051616.1
See Comparison
NZ_AP022065.1
See Comparison
NZ_MK295819.1
See Comparison
NZ_LC520283.1
See Comparison
NZ_LC520287.1
See Comparison
NZ_LC520270.1
See Comparison
NZ_MK295830.1
See Comparison
NZ_LC520281.1
See Comparison
NZ_LC520285.1
See Comparison
NZ_CP124411.1
See Comparison
NZ_CP021871.1
See Comparison
NZ_CP021180.1
See Comparison
NZ_CP103593.1
See Comparison
CP088716.1
See Comparison
CP088599.1
See Comparison
NZ_CP124416.1
See Comparison
NZ_CP124393.1
See Comparison
NZ_MK295819.1
See Comparison
NZ_CP051616.1
See Comparison
NZ_AP022065.1
See Comparison
NZ_MG886288.1
See Comparison
NZ_LC520270.1
See Comparison
NZ_LC520281.1
See Comparison
NZ_LC520285.1
See Comparison
NZ_LC520287.1
See Comparison
NZ_LC520283.1
See Comparison
NZ_MK295830.1
See Comparison
CP088716.1
See Comparison
NZ_CP103593.1
See Comparison
CP088599.1
See Comparison
NZ_CP124393.1
See Comparison
NZ_CP021180.1
See Comparison
NZ_CP021871.1
See Comparison
NZ_MG886288.1
See Comparison
NZ_CP124416.1
See Comparison
NZ_LC520287.1
See Comparison
NZ_AP022065.1
See Comparison
NZ_CP051616.1
See Comparison
NZ_LC520270.1
See Comparison
NZ_MK295830.1
See Comparison
NZ_LC520281.1
See Comparison
NZ_LC520285.1
See Comparison
NZ_LC520283.1
See Comparison
CP088716.1
See Comparison
NZ_MK295819.1
See Comparison
NZ_CP103593.1
See Comparison
CP088599.1
See Comparison
NZ_CP021180.1
See Comparison
NZ_CP021871.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore