Plasmid NZ_CP124413.1

Sequence

Nucleotide Information

Accession NZ_CP124413.1
Description Escherichia coli strain AVS0543 plasmid pAVS0543-C, complete sequence
Source refseq
Topology circular
Length 4083 bp
GC Content 0.49 %
Created at NCBI May 21, 2023



Assembly

Genome Data Information

Accession GCF_030039375.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 34360976

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Switzerland,Kanton Zug
Original Query Type name
Coordinates (Lat/Lon) 47.15/8.55
Address Switzerland,Kanton Zug

ECOSYSTEM
Original Query environmental: river near WWTP effluent
Classification aquatic,freshwater,river
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_KT693143.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_CP124413.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP082102.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_KT693143.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_AP022168.1 See Comparison
NZ_KT693144.1 See Comparison
NZ_OU342908.1 See Comparison
NZ_OP378620.1 See Comparison
NZ_CP053759.1 See Comparison
NZ_OW848787.1 See Comparison
NZ_LR130566.1 See Comparison
NZ_CP124371.1 See Comparison
NZ_CP107124.1 See Comparison
NZ_CP082102.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore