Plasmid CP088599.1

Sequence

Nucleotide Information

Accession CP088599.1
Description Escherichia coli strain D16EC0480 plasmid pD16EC0480-1, complete sequence
Source insd
Topology circular
Length 131423 bp
GC Content 0.52 %
Created at NCBI Dec. 9, 2021



Assembly

Genome Data Information

Accession GCF_021131915.1
Assembly Coverage 223


Biosample

Curated Collection Information
Accession 23391625

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 36.80N;127.70E
Original Query Type coordinates
Coordinates (Lat/Lon) 36.80/127.70
Address Suam-ri, Sari-myeon, Goesan-gun, North Chungcheong, 28047, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

CP088716.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP015140.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124518.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_CP103593.1 See Comparison
CP088716.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP015140.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124518.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_CP124411.1 See Comparison
CP088716.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP015140.1 See Comparison
NZ_CP124518.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_LC520287.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_CP015140.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124518.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_CP021180.1 See Comparison
CP088716.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP015140.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_CP124518.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP021180.1 See Comparison
CP088716.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP015140.1 See Comparison
NZ_CP124518.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_CP103593.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore