Plasmid NZ_LC520287.1

Sequence

Nucleotide Information

Accession NZ_LC520287.1
Description Escherichia coli strain HP129 plasmid pHP129, complete sequence
Source refseq
Topology circular
Length 135628 bp
GC Content 0.52 %
Created at NCBI Aug. 4, 2020



Biosample

Curated Collection Information

Accession 14338855

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization




Similar Plasmids

based on Mash distance

NZ_CP124393.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_LC520285.1 See Comparison
CP088716.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_CP103593.1 See Comparison
CP088599.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP124393.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
CP088716.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_CP103593.1 See Comparison
CP088599.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP103593.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_CP103593.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP021871.1 See Comparison


Plasmid Visualization


SourceElement Name Display Sequence Favorite
amrfinderplusblaCTX-M-27copy
amrfinderplusaph(6)-Idcopy
amrfinderplusaadA5copy
amrfinderplusaph(3'')-Ibcopy
amrfinderplusdfrA17copy
rgidfrA17copy
rgimphAcopy
rgiMrxcopy
amrfinderplusqacEdelta1copy
amrfinderplussenBcopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 152 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000096__NC_019117_00097IncFIB1978plus98.87510001746
repliconCP030770_00142rep_cluster_21312328723834minus92.0631000780
replicon000136__AP014877_00014IncFIA6523966096minus95.33810001363
repliconAJ851089IncFII6609466354plus1001006.309999999999996e-134483
repliconAF250878IncFIA113675114060minus88.402991.27e-127462
relaxaseNC_021819_00066MOBP1342913767minus88.496982.75e-58208
relaxaseNC_017627_00068MOBF7222377490minus97.2110003341
mate-pair-formation08-5333_00200MPF_Unknown7749379724minus97.05510001435
mate-pair-formationNC_008460_00107MPF_F8198584801minus97.5519901785
mate-pair-formationNC_010719_00097MPF_F8480186174minus96.9431000799
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 10 of 12 entries