Plasmid NZ_LC520287.1
Sequence
Nucleotide Information
Accession | NZ_LC520287.1 |
---|---|
Description | Escherichia coli strain HP129 plasmid pHP129, complete sequence |
Source | refseq |
Topology | circular |
Length | 135628 bp |
GC Content | 0.52 % |
Created at NCBI | Aug. 4, 2020 |
Host Taxonomy
According to NCBI Taxonomy
Assigned Host | Escherichia coli (562) |
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Lineage
Superkingdom | Bacteria (2) |
---|---|
Phylum | Pseudomonadota (1224) |
Class | Gammaproteobacteria (1236) |
Order | Enterobacterales (91347) |
Family | Enterobacteriaceae (543) |
Genus | Escherichia (561) |
Species | Escherichia_coli (562) |
Strain |
Biosample
Curated Collection Information
Accession | 14338855 |
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PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query | Japan |
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Original Query Type | name |
Coordinates (Lat/Lon) | 36.57/139.24 |
Address | Japan |
ECOSYSTEM
Original Query | Homo sapiens |
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Classification | host_associated |
Host-associated Taxon |
|
DISEASE
Original Query | None |
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DOID/SYMP |
Visualization
Similar Plasmids
based on Mash distance
Plasmid Visualization
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Source | Element Name | Display | Sequence | Favorite |
---|---|---|---|---|
amrfinderplus | blaCTX-M-27 | copy | ||
amrfinderplus | aph(6)-Id | copy | ||
amrfinderplus | aadA5 | copy | ||
amrfinderplus | aph(3'')-Ib | copy | ||
amrfinderplus | dfrA17 | copy | ||
rgi | dfrA17 | copy | ||
rgi | mphA | copy | ||
rgi | Mrx | copy | ||
amrfinderplus | qacEdelta1 | copy | ||
amrfinderplus | senB | copy | ||
Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 152 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
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NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
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NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
---|---|---|---|---|---|---|---|---|---|---|
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NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
---|---|---|---|---|---|---|---|---|---|
replicon | 000096__NC_019117_00097 | IncFIB | 1 | 978 | plus | 98.875 | 100 | 0 | 1746 |
replicon | CP030770_00142 | rep_cluster_2131 | 23287 | 23834 | minus | 92.063 | 100 | 0 | 780 |
replicon | 000136__AP014877_00014 | IncFIA | 65239 | 66096 | minus | 95.338 | 100 | 0 | 1363 |
replicon | AJ851089 | IncFII | 66094 | 66354 | plus | 100 | 100 | 6.309999999999996e-134 | 483 |
replicon | AF250878 | IncFIA | 113675 | 114060 | minus | 88.402 | 99 | 1.27e-127 | 462 |
relaxase | NC_021819_00066 | MOBP | 13429 | 13767 | minus | 88.496 | 98 | 2.75e-58 | 208 |
relaxase | NC_017627_00068 | MOBF | 72223 | 77490 | minus | 97.21 | 100 | 0 | 3341 |
mate-pair-formation | 08-5333_00200 | MPF_Unknown | 77493 | 79724 | minus | 97.055 | 100 | 0 | 1435 |
mate-pair-formation | NC_008460_00107 | MPF_F | 81985 | 84801 | minus | 97.551 | 99 | 0 | 1785 |
mate-pair-formation | NC_010719_00097 | MPF_F | 84801 | 86174 | minus | 96.943 | 100 | 0 | 799 |
biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries