Plasmid NZ_CP051616.1

Sequence

Nucleotide Information

Accession NZ_CP051616.1
Description Escherichia coli O25b:H4-ST131 strain 2017_APHA plasmid pAPHA_2017_1, complete sequence
Source refseq
Topology circular
Length 134872 bp
GC Content 0.52 %
Created at NCBI Aug. 18, 2020



Assembly

Genome Data Information

Accession GCF_014217155.1
Assembly Coverage 50


Biosample

Curated Collection Information
Accession 14594834

PLASMID INFORMATION
Genotype ST131

GEOGRAPHICAL INFORMATION
Original Query United Kingdom
Original Query Type name
Coordinates (Lat/Lon) 54.70/-3.28
Address United Kingdom

ECOSYSTEM
Original Query Pig,Bacterial culture,cecal sample
Classification cecal,cell_culture,gastrointestinal_system,host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MG886288.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
CP088716.1 See Comparison
NZ_CP103593.1 See Comparison
CP088599.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124416.1 See Comparison
CP088716.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
CP088599.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_CP103593.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MG886288.1 See Comparison
CP088716.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
CP088599.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_CP103593.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_CP021180.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124416.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore