Plasmid NZ_CP021180.1

Sequence

Nucleotide Information

Accession NZ_CP021180.1
Description Escherichia coli strain 81009 plasmid pEC-81009, complete sequence
Source refseq
Topology circular
Length 135720 bp
GC Content 0.52 %
Created at NCBI May 26, 2017



Assembly

Genome Data Information

Accession GCF_002157245.1
Assembly Coverage 275


Biosample

Curated Collection Information
Accession 6808253

PLASMID INFORMATION
BIOSAMPLE_pathotype ExPEC

GEOGRAPHICAL INFORMATION
Original Query 24.1955N;55.65E
Original Query Type coordinates
Coordinates (Lat/Lon) 24.20/55.65
Address Tawam Hospital, Tuwam Street, Al Maqam, Al Ain, Abu Dhabi Emirate, United Arab Emirates

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 76
Host-associated Sex male

DISEASE
Original Query Bacteriuria
DOID/SYMP
  • Bacteriuria (DOID:1412 )
    • A urinary system disease which consists of the presence of bacteria in urine.

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

NZ_MG886288.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_CP103593.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP103593.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_CP124411.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_LC520283.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_MK295819.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP103593.1 See Comparison
NZ_CP021180.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124421.1 See Comparison
NZ_CP051616.1 See Comparison
NZ_MK295830.1 See Comparison
NZ_MK295819.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP021871.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_MG886288.1 See Comparison
NZ_AP022065.1 See Comparison
NZ_LC520287.1 See Comparison
NZ_LC520270.1 See Comparison
NZ_LC520281.1 See Comparison
NZ_LC520285.1 See Comparison
NZ_LC520283.1 See Comparison
NZ_CP103593.1 See Comparison
CP088716.1 See Comparison
CP088599.1 See Comparison
NZ_CP124393.1 See Comparison
NZ_CP124416.1 See Comparison
NZ_CP124411.1 See Comparison
NZ_CP124421.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore