Plasmid NZ_CP120145.1

Sequence

Nucleotide Information

Accession NZ_CP120145.1
Description Staphylococcus aureus strain Dog032 plasmid unnamed2, complete sequence
Source refseq
Topology circular
Length 3128 bp
GC Content 0.29 %
Created at NCBI Jan. 6, 2024



Assembly

Genome Data Information

Accession GCF_034042695.1
Assembly Coverage 454


Biosample

Curated Collection Information
Accession 33696778

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 1.3345S;36.7331E
Original Query Type coordinates
Coordinates (Lat/Lon) -1.33/36.73
Address Hillcrest Elementary School, Hillcrest Road, Karen C, Karen ward, Lang'ata, Nairobi, Nairobi County, Nairobi, 00517, Kenya

ECOSYSTEM
Original Query Canis lupus familiaris,cell culture,nostril,nasal swab
Classification cell_culture,host_associated,nasal,respiratory_system
Host-associated Taxon
  • Canis lupus (9615)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NC_010428.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP120124.1 See Comparison
NC_010428.1 See Comparison
NZ_CP120059.1 See Comparison
NZ_CP120145.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120052.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120113.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120127.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120164.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120043.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120178.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP103849.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP120059.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120052.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP103849.1 See Comparison
NC_010428.1 See Comparison
NZ_CP120124.1 See Comparison
NZ_CP120113.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120127.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120164.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120043.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120178.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP120124.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP120059.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120052.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120127.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120164.1 See Comparison
NZ_CP120113.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120043.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120178.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP103849.1 See Comparison
NC_010428.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP120124.1 See Comparison
NZ_CP120127.1 See Comparison
NZ_CP120059.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120164.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120043.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120052.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120178.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120113.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120059.1 See Comparison
NZ_CP103849.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP120124.1 See Comparison
NC_010428.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120164.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120043.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120178.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120052.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120113.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120127.1 See Comparison
NC_010428.1 See Comparison
NZ_CP120059.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120052.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120113.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120127.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120040.1 See Comparison
NC_010428.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120178.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP103849.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP120124.1 See Comparison
NZ_CP120164.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120043.1 See Comparison
NZ_CP120046.1 See Comparison
NZ_CP120092.1 See Comparison
NZ_CP120178.1 See Comparison
NZ_CP120110.1 See Comparison
NZ_CP120055.1 See Comparison
NZ_CP103849.1 See Comparison
NZ_CP129354.1 See Comparison
NZ_CP129359.1 See Comparison
NZ_CP120124.1 See Comparison
NZ_CP120059.1 See Comparison
NZ_CP120049.1 See Comparison
NZ_CP120035.1 See Comparison
NZ_CP120072.1 See Comparison
NZ_CP120032.1 See Comparison
NZ_CP120136.1 See Comparison
NZ_CP120052.1 See Comparison
NZ_CP120203.1 See Comparison
NZ_CP120019.1 See Comparison
NZ_CP120169.1 See Comparison
NZ_CP120098.1 See Comparison
NZ_CP120120.1 See Comparison
NZ_CP120081.1 See Comparison
NZ_CP120113.1 See Comparison
NZ_CP120176.1 See Comparison
NZ_CP120142.1 See Comparison
NZ_CP120095.1 See Comparison
NZ_CP120117.1 See Comparison
NZ_CP120172.1 See Comparison
NZ_CP120127.1 See Comparison
NZ_CP120154.1 See Comparison
NZ_CP120040.1 See Comparison
NZ_CP120164.1 See Comparison
NZ_CP120184.1 See Comparison
NZ_CP120043.1 See Comparison
NZ_CP103849.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2