Plasmid NZ_CP010878.1

Sequence

Nucleotide Information

Accession NZ_CP010878.1
Description Escherichia coli strain MNCRE44 plasmid pMNCRE44_2, complete sequence
Source refseq
Topology circular
Length 4088 bp
GC Content 0.50 %
Created at NCBI March 4, 2015



Assembly

Genome Data Information

Accession GCF_000931565.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 3287565

PLASMID INFORMATION
BIOSAMPLE_pathotype UPEC

GEOGRAPHICAL INFORMATION
Original Query 46N;94W
Original Query Type coordinates
Coordinates (Lat/Lon) 46.00/-94.00
Address 16451, 320th Avenue, Morrison County, Minnesota, 56364, United States

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query sepsis
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP147530.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP128949.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP091760.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
CP082460.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP091760.1 See Comparison
CP082460.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_CP091760.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_OX030706.1 See Comparison
CP082460.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_OX030706.1 See Comparison
CP082460.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_CP091760.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_CP069562.1 See Comparison
AP026486.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
AP026482.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP018966.1 See Comparison
CP082460.1 See Comparison
NZ_CP091760.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP147530.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_AP027839.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP069562.1 See Comparison
AP026486.1 See Comparison
NZ_AP022035.1 See Comparison
NZ_AP022002.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
AP026482.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP091760.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP135704.1 See Comparison
CP082460.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP128891.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore