Plasmid NZ_CP018966.1

Sequence

Nucleotide Information

Accession	NZ_CP018966.1
Description	Escherichia coli strain Ecol_542 plasmid pEC542_4, complete sequence
Source	refseq
Topology	circular
Length	4087 bp
GC Content	0.50 %
Created at NCBI	March 6, 2017

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_002012025.1
Assembly Coverage	None

Biosample

Curated Collection Information

Accession	5511186

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	10.82N;106.62E
Original Query Type	coordinates
Coordinates (Lat/Lon)	10.82/106.62
Address	Phường Tân Thới Nhất, District 12, Ho Chi Minh City, 71509, Vietnam

ECOSYSTEM

Original Query	Homo sapiens
Classification	host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

AP026486.1	See Comparison
AP026482.1	See Comparison
NZ_OX030706.1	See Comparison
NZ_CP091760.1	See Comparison
CP082460.1	See Comparison
NZ_CP010878.1	See Comparison
NZ_CP023832.1	See Comparison
NZ_CP128949.1	See Comparison
NZ_CP135704.1	See Comparison
NZ_CP128911.1	See Comparison
NZ_CP128891.1	See Comparison
NZ_OZ039050.1	See Comparison
NZ_CP124409.1	See Comparison
NZ_CP124458.1	See Comparison
NZ_CP147530.1	See Comparison
NZ_OZ040271.1	See Comparison
NZ_CP147527.1	See Comparison
NZ_AP027839.1	See Comparison
NZ_CP145147.1	See Comparison
NZ_CP069562.1	See Comparison
NZ_LC438464.1	See Comparison
NZ_CP070591.1	See Comparison
NZ_AP022035.1	See Comparison
NZ_MN689939.1	See Comparison
NZ_AP022002.1	See Comparison
NZ_AP022068.1	See Comparison
AP026486.1	See Comparison
NZ_CP116150.1	See Comparison
NZ_CP116186.1	See Comparison
AP026482.1	See Comparison
NZ_OX030706.1	See Comparison
NZ_CP010878.1	See Comparison
NZ_CP091760.1	See Comparison
CP082460.1	See Comparison
NZ_CP023832.1	See Comparison
NZ_OZ040271.1	See Comparison
NZ_CP124409.1	See Comparison
NZ_CP124458.1	See Comparison
NZ_CP135704.1	See Comparison
NZ_CP128949.1	See Comparison
NZ_CP128911.1	See Comparison
NZ_CP128891.1	See Comparison
NZ_OZ039050.1	See Comparison
NZ_CP145147.1	See Comparison
NZ_CP147530.1	See Comparison
NZ_CP147527.1	See Comparison
NZ_CP069562.1	See Comparison
NZ_AP027839.1	See Comparison
NZ_LC438464.1	See Comparison
NZ_CP070591.1	See Comparison
NZ_CP116150.1	See Comparison
NZ_MN689939.1	See Comparison
NZ_AP022035.1	See Comparison
NZ_AP022068.1	See Comparison
NZ_AP022002.1	See Comparison
NZ_CP116186.1	See Comparison
CP082460.1	See Comparison
AP026486.1	See Comparison
AP026482.1	See Comparison
NZ_OX030706.1	See Comparison
NZ_CP091760.1	See Comparison
NZ_CP135704.1	See Comparison
NZ_CP010878.1	See Comparison
NZ_CP023832.1	See Comparison
NZ_CP128949.1	See Comparison
NZ_CP128911.1	See Comparison
NZ_CP128891.1	See Comparison
NZ_CP147530.1	See Comparison
NZ_OZ040271.1	See Comparison
NZ_OZ039050.1	See Comparison
NZ_CP124409.1	See Comparison
NZ_CP124458.1	See Comparison
NZ_CP147527.1	See Comparison
NZ_AP027839.1	See Comparison
NZ_CP145147.1	See Comparison
NZ_CP070591.1	See Comparison
NZ_LC438464.1	See Comparison
NZ_AP022035.1	See Comparison
NZ_MN689939.1	See Comparison
NZ_CP069562.1	See Comparison
NZ_AP022068.1	See Comparison
NZ_AP022002.1	See Comparison
NZ_CP116150.1	See Comparison
NZ_CP116186.1	See Comparison
NZ_CP135704.1	See Comparison
NZ_OX030706.1	See Comparison
NZ_CP091760.1	See Comparison
NZ_CP010878.1	See Comparison
AP026486.1	See Comparison
AP026482.1	See Comparison
CP082460.1	See Comparison
NZ_CP023832.1	See Comparison
NZ_CP124458.1	See Comparison
NZ_CP124409.1	See Comparison
NZ_CP128949.1	See Comparison
NZ_CP128911.1	See Comparison
NZ_CP128891.1	See Comparison
NZ_CP147527.1	See Comparison
NZ_OZ040271.1	See Comparison
NZ_OZ039050.1	See Comparison
NZ_CP145147.1	See Comparison
NZ_CP147530.1	See Comparison
NZ_AP022035.1	See Comparison
NZ_AP027839.1	See Comparison
NZ_LC438464.1	See Comparison
NZ_CP070591.1	See Comparison
NZ_MN689939.1	See Comparison
NZ_CP069562.1	See Comparison
NZ_AP022068.1	See Comparison
NZ_AP022002.1	See Comparison
NZ_CP018966.1	See Comparison
AP026486.1	See Comparison
AP026482.1	See Comparison
NZ_OX030706.1	See Comparison
NZ_CP091760.1	See Comparison
NZ_CP116150.1	See Comparison
NZ_CP116186.1	See Comparison
CP082460.1	See Comparison
NZ_CP023832.1	See Comparison
NZ_CP010878.1	See Comparison
NZ_CP135704.1	See Comparison
NZ_CP128949.1	See Comparison
NZ_CP128911.1	See Comparison
NZ_CP128891.1	See Comparison
NZ_CP124458.1	See Comparison
NZ_CP147530.1	See Comparison
NZ_CP124409.1	See Comparison
NZ_OZ040271.1	See Comparison
NZ_OZ039050.1	See Comparison
NZ_CP147527.1	See Comparison
NZ_CP145147.1	See Comparison
NZ_LC438464.1	See Comparison
NZ_AP027839.1	See Comparison
NZ_CP069562.1	See Comparison
NZ_CP070591.1	See Comparison
NZ_CP010878.1	See Comparison
NZ_AP022035.1	See Comparison
NZ_AP022068.1	See Comparison
NZ_AP022002.1	See Comparison
NZ_CP116150.1	See Comparison
NZ_CP116186.1	See Comparison
NZ_CP091760.1	See Comparison
NZ_MN689939.1	See Comparison
AP026486.1	See Comparison
AP026482.1	See Comparison
NZ_OX030706.1	See Comparison
CP082460.1	See Comparison
NZ_CP023832.1	See Comparison
NZ_CP070591.1	See Comparison
NZ_CP124409.1	See Comparison
NZ_OZ040271.1	See Comparison
NZ_OZ039050.1	See Comparison
NZ_CP147530.1	See Comparison
NZ_CP147527.1	See Comparison
NZ_CP145147.1	See Comparison
NZ_LC438464.1	See Comparison
NZ_CP135704.1	See Comparison
NZ_CP128949.1	See Comparison
NZ_CP128911.1	See Comparison
NZ_CP128891.1	See Comparison
NZ_CP124458.1	See Comparison
NZ_AP027839.1	See Comparison
NZ_CP116150.1	See Comparison
NZ_MN689939.1	See Comparison
NZ_AP022035.1	See Comparison
NZ_AP022068.1	See Comparison
NZ_CP069562.1	See Comparison
NZ_AP022002.1	See Comparison
NZ_CP116186.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore