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v. 2024_05_31_v2
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Typing
Plasmid NZ_CP091760.1
Sequence
Nucleotide Information
Accession
NZ_CP091760.1
Description
Escherichia coli strain LC-1302-2020 plasmid p4-LC-1302-2020, complete sequence
Source
refseq
Topology
circular
Length
4089 bp
GC Content
0.50 %
Created at NCBI
March 16, 2022
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_022559875.1
Assembly Coverage
339.678
Biosample
Curated Collection Information
Accession
25301092
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
45.8523N;9.4144E
Original Query Type
coordinates
Coordinates (Lat/Lon)
45.85/9.41
Address
Ospedale Alessandro Manzoni, 9;11, Via dell'Eremo, Belledo, Lecco, Lombardy, 23900, Italy
ECOSYSTEM
Original Query
Homo sapiens,rectal swab
Classification
gastrointestinal_system,host_associated,rectal
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Intestinal colonization
DOID/SYMP
Intestinal infectious disease
(
DOID:100
)
An intestinal disease that involves intestinal infection that has_material_basis_in viruses, bacteria, fungi and parasites.
Has_material_basis_in: ['viruses']
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP091761.1
NZ_CP091759.1
NZ_CP091758.1
NZ_CP091757.1
Similar Plasmids
based on Mash distance
NZ_CP135704.1
See Comparison
NZ_CP128949.1
See Comparison
NZ_CP128911.1
See Comparison
NZ_CP124458.1
See Comparison
NZ_OZ040271.1
See Comparison
NZ_OZ039050.1
See Comparison
NZ_CP147527.1
See Comparison
NZ_CP145147.1
See Comparison
NZ_LC438464.1
See Comparison
NZ_CP070591.1
See Comparison
NZ_CP069562.1
See Comparison
NZ_MN689939.1
See Comparison
NZ_CP116150.1
See Comparison
NZ_CP116186.1
See Comparison
NZ_OX030706.1
See Comparison
AP026486.1
See Comparison
AP026482.1
See Comparison
CP082460.1
See Comparison
NZ_CP010878.1
See Comparison
NZ_CP018966.1
See Comparison
NZ_CP023832.1
See Comparison
NZ_OZ040271.1
See Comparison
NZ_CP124458.1
See Comparison
NZ_OZ039050.1
See Comparison
NZ_CP135704.1
See Comparison
NZ_CP128949.1
See Comparison
NZ_CP128911.1
See Comparison
NZ_LC438464.1
See Comparison
NZ_CP145147.1
See Comparison
NZ_CP147527.1
See Comparison
NZ_CP070591.1
See Comparison
NZ_CP069562.1
See Comparison
NZ_OX030706.1
See Comparison
NZ_MN689939.1
See Comparison
NZ_CP116150.1
See Comparison
NZ_CP116186.1
See Comparison
AP026486.1
See Comparison
AP026482.1
See Comparison
NZ_CP018966.1
See Comparison
CP082460.1
See Comparison
NZ_CP124458.1
See Comparison
NZ_CP135704.1
See Comparison
NZ_CP128949.1
See Comparison
NZ_CP128911.1
See Comparison
NZ_CP010878.1
See Comparison
NZ_CP023832.1
See Comparison
NZ_CP145147.1
See Comparison
NZ_OZ040271.1
See Comparison
NZ_OZ039050.1
See Comparison
NZ_CP147527.1
See Comparison
CP082460.1
See Comparison
NZ_CP069562.1
See Comparison
AP026486.1
See Comparison
AP026482.1
See Comparison
NZ_LC438464.1
See Comparison
NZ_CP070591.1
See Comparison
NZ_MN689939.1
See Comparison
NZ_CP116150.1
See Comparison
NZ_CP116186.1
See Comparison
NZ_OX030706.1
See Comparison
NZ_CP018966.1
See Comparison
NZ_CP023832.1
See Comparison
NZ_CP010878.1
See Comparison
NZ_CP135704.1
See Comparison
NZ_CP124458.1
See Comparison
NZ_CP128949.1
See Comparison
NZ_CP128911.1
See Comparison
NZ_OZ040271.1
See Comparison
NZ_OZ039050.1
See Comparison
NZ_CP145147.1
See Comparison
NZ_CP147527.1
See Comparison
NZ_CP069562.1
See Comparison
NZ_LC438464.1
See Comparison
NZ_CP070591.1
See Comparison
NZ_MN689939.1
See Comparison
NZ_CP018966.1
See Comparison
NZ_CP116150.1
See Comparison
NZ_CP116186.1
See Comparison
CP082460.1
See Comparison
AP026486.1
See Comparison
AP026482.1
See Comparison
NZ_OX030706.1
See Comparison
NZ_CP145147.1
See Comparison
NZ_CP010878.1
See Comparison
NZ_CP135704.1
See Comparison
NZ_CP147527.1
See Comparison
NZ_CP023832.1
See Comparison
NZ_CP128949.1
See Comparison
NZ_CP128911.1
See Comparison
NZ_CP124458.1
See Comparison
NZ_OZ040271.1
See Comparison
NZ_OZ039050.1
See Comparison
NZ_CP069562.1
See Comparison
NZ_LC438464.1
See Comparison
NZ_CP070591.1
See Comparison
NZ_OX030706.1
See Comparison
NZ_MN689939.1
See Comparison
AP026486.1
See Comparison
AP026482.1
See Comparison
NZ_CP116150.1
See Comparison
NZ_CP116186.1
See Comparison
NZ_LC438464.1
See Comparison
NZ_CP018966.1
See Comparison
NZ_CP010878.1
See Comparison
NZ_CP023832.1
See Comparison
NZ_CP128949.1
See Comparison
NZ_CP128911.1
See Comparison
NZ_CP124458.1
See Comparison
NZ_CP147527.1
See Comparison
NZ_CP145147.1
See Comparison
NZ_CP091760.1
See Comparison
CP082460.1
See Comparison
NZ_CP135704.1
See Comparison
NZ_OZ040271.1
See Comparison
NZ_OZ039050.1
See Comparison
NZ_CP069562.1
See Comparison
NZ_CP070591.1
See Comparison
NZ_MN689939.1
See Comparison
AP026486.1
See Comparison
AP026482.1
See Comparison
CP082460.1
See Comparison
NZ_CP023832.1
See Comparison
NZ_CP116150.1
See Comparison
NZ_CP116186.1
See Comparison
NZ_OX030706.1
See Comparison
NZ_CP018966.1
See Comparison
NZ_CP010878.1
See Comparison
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
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NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore