Plasmid NZ_CP091760.1

Sequence

Nucleotide Information

Accession NZ_CP091760.1
Description Escherichia coli strain LC-1302-2020 plasmid p4-LC-1302-2020, complete sequence
Source refseq
Topology circular
Length 4089 bp
GC Content 0.50 %
Created at NCBI March 16, 2022



Assembly

Genome Data Information

Accession GCF_022559875.1
Assembly Coverage 339.678


Biosample

Curated Collection Information
Accession 25301092

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 45.8523N;9.4144E
Original Query Type coordinates
Coordinates (Lat/Lon) 45.85/9.41
Address Ospedale Alessandro Manzoni, 9;11, Via dell'Eremo, Belledo, Lecco, Lombardy, 23900, Italy

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Intestinal colonization
DOID/SYMP
  • Intestinal infectious disease (DOID:100 )
    • An intestinal disease that involves intestinal infection that has_material_basis_in viruses, bacteria, fungi and parasites.
    • Has_material_basis_in: ['viruses']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP135704.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
NZ_OX030706.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
CP082460.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_CP018966.1 See Comparison
CP082460.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP147527.1 See Comparison
CP082460.1 See Comparison
NZ_CP069562.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_MN689939.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
CP082460.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_MN689939.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
NZ_LC438464.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP010878.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP128949.1 See Comparison
NZ_CP128911.1 See Comparison
NZ_CP124458.1 See Comparison
NZ_CP147527.1 See Comparison
NZ_CP145147.1 See Comparison
NZ_CP091760.1 See Comparison
CP082460.1 See Comparison
NZ_CP135704.1 See Comparison
NZ_OZ040271.1 See Comparison
NZ_OZ039050.1 See Comparison
NZ_CP069562.1 See Comparison
NZ_CP070591.1 See Comparison
NZ_MN689939.1 See Comparison
AP026486.1 See Comparison
AP026482.1 See Comparison
CP082460.1 See Comparison
NZ_CP023832.1 See Comparison
NZ_CP116150.1 See Comparison
NZ_CP116186.1 See Comparison
NZ_OX030706.1 See Comparison
NZ_CP018966.1 See Comparison
NZ_CP010878.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore