PLSDB
v. 2024_05_31_v2
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Typing
Plasmid NZ_CP141205.1
Sequence
Nucleotide Information
Accession
NZ_CP141205.1
Description
Escherichia coli strain WGS1363 plasmid unnamed2, complete sequence
Source
refseq
Topology
circular
Length
5167 bp
GC Content
0.48 %
Created at NCBI
Jan. 30, 2024
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Assembly
Genome Data Information
Accession
GCF_024199045.2
Assembly Coverage
80
Biosample
Curated Collection Information
Accession
29499981
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
55.67N;12.57E
Original Query Type
coordinates
Coordinates (Lat/Lon)
55.67/12.57
Address
Mitchellsgade, Postbyen, Meatpacking District, Copenhagen, Copenhagen Municipality, Indre By, Capital Region of Denmark, 1568, Denmark
ECOSYSTEM
Original Query
Homo sapiens,urine
Classification
host_associated,urinary_system
Host-associated Taxon
Homo sapiens (
9606
)
DISEASE
Original Query
Clinical infection
DOID/SYMP
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
PNG
JSON
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Plasmids from same Biosample
NZ_CP141206.1
NZ_CP141203.1
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CP090256.1
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NZ_CP107131.1
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NZ_CP128910.1
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NZ_CP124412.1
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NZ_CP124427.1
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NZ_CP124444.1
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NZ_CP124465.1
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NZ_CP124403.1
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NZ_CP124433.1
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NZ_CP124408.1
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NZ_CP124418.1
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NZ_CP124438.1
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NZ_CP124457.1
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CP125078.1
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CP125074.1
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CP125057.1
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CP125048.1
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CP124982.1
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NZ_CP124390.1
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NZ_CP124369.1
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NZ_OZ040952.1
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NZ_OZ040467.1
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NZ_OZ040270.1
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NZ_OZ040719.1
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NZ_OZ039048.1
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NZ_OZ039173.1
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NZ_CP145624.1
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NZ_CP145650.1
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NZ_CP107238.1
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NZ_CP107232.1
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NZ_AP027568.1
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AP029165.1
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NZ_CP142934.1
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CP052222.1
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NZ_CP054217.1
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NZ_CP054222.1
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NZ_CP070180.1
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NZ_CP041341.1
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NZ_CP031132.1
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NZ_CP069830.1
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NZ_CP069983.1
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NZ_CP070013.1
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NZ_CP070114.1
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NZ_CP063777.1
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NZ_AP022329.1
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NZ_AP022167.1
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NZ_CP095527.1
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NZ_CP099757.1
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NZ_CP109879.1
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NZ_CP104670.1
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NZ_CP103472.1
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NZ_CP103525.1
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NZ_CP103483.1
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NZ_CP103595.1
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NZ_CP091687.1
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NZ_CP024722.1
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NZ_CP135703.1
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CP134902.1
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NZ_CP124412.1
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NZ_CP107131.1
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NZ_CP128910.1
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NZ_CP124427.1
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NZ_CP124444.1
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NZ_CP124465.1
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NZ_CP124403.1
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NZ_CP124433.1
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NZ_CP124408.1
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NZ_CP124418.1
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NZ_CP124438.1
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NZ_CP124422.1
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NZ_CP124457.1
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NZ_CP145624.1
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CP125078.1
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CP125057.1
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NZ_AP022047.1
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NZ_AP022100.1
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NZ_AP022180.1
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NZ_AP022067.1
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NZ_AP021966.1
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NZ_AP022001.1
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NZ_OP242258.1
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NZ_CP074489.1
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NZ_CP116149.1
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NZ_CP116130.1
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NZ_CP116185.1
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NZ_CP116139.1
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NZ_CP095527.1
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NZ_CP104670.1
See Comparison
NZ_CP103472.1
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NZ_CP103525.1
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NZ_CP103483.1
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NZ_CP103595.1
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NZ_CP091708.1
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NZ_CP091759.1
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NZ_CP091687.1
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NZ_CP051664.1
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AP024698.1
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CP090256.1
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CP088691.1
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CP088686.1
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CP088455.1
See Comparison
CP088368.1
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NZ_CP076696.1
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NZ_CP071078.1
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NZ_CP010879.1
See Comparison
NZ_CP014318.1
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NZ_CP018967.1
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NZ_CP012637.1
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NC_022649.1
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NZ_CP034960.1
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NZ_CP023848.1
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NZ_CP023831.1
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NZ_CP024722.1
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NZ_CP135669.1
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NZ_CP137120.1
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CP136917.1
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NZ_CP135703.1
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NZ_CP135461.1
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CP134902.1
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NZ_CP107131.1
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NZ_CP059334.1
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NZ_CP124412.1
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NZ_CP128910.1
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NZ_CP124457.1
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NZ_CP124427.1
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NZ_CP124444.1
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NZ_CP124465.1
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NZ_CP124403.1
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NZ_CP124433.1
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NZ_CP124408.1
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NZ_CP124418.1
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NZ_CP124438.1
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CP125078.1
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NZ_CP124422.1
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CP125074.1
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CP125057.1
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CP125048.1
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CP124982.1
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NZ_CP124369.1
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NZ_OZ040719.1
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NZ_CP145650.1
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NZ_CP107232.1
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NZ_AP027568.1
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NZ_CP142934.1
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AP029165.1
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NZ_CP141559.1
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NZ_CP139857.1
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NZ_CP139802.1
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NZ_CP054222.1
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NZ_CP053249.1
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CP054339.1
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NZ_MG649065.1
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CP052222.1
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NZ_CP031132.1
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CP052323.1
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NZ_CP041341.1
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NZ_AP022329.1
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NZ_CP069830.1
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NZ_CP070180.1
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NZ_CP069983.1
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NZ_CP070013.1
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NZ_LR890331.1
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NZ_LR890695.1
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NZ_LR890338.1
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NZ_CP070114.1
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NZ_CP063777.1
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NZ_AP022167.1
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NZ_OP242258.1
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NZ_CP049125.1
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NZ_CP051619.1
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NZ_AP022074.1
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NZ_AP022051.1
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NZ_AP022034.1
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NZ_AP022047.1
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NZ_AP022100.1
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NZ_AP022180.1
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NZ_AP022067.1
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NZ_AP021966.1
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NZ_AP022001.1
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NZ_OP378613.1
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NZ_CP074489.1
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NZ_CP116149.1
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NZ_CP116130.1
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NZ_CP116185.1
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NZ_CP116139.1
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NZ_CP095527.1
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NZ_CP099757.1
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NZ_CP109879.1
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NZ_CP104670.1
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NZ_CP071078.1
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NZ_CP103472.1
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NZ_CP103525.1
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NZ_CP103483.1
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NZ_CP103595.1
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OW967385.1
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NZ_CP051664.1
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NZ_CP076696.1
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NZ_CP091708.1
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NZ_CP091687.1
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CP090256.1
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CP088691.1
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CP088686.1
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CP088455.1
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NC_022649.1
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CP134902.1
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NZ_CP124422.1
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NZ_CP124457.1
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NZ_AP027568.1
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CP125078.1
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CP125074.1
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CP125057.1
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CP125048.1
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CP124982.1
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NZ_CP145624.1
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NZ_CP124412.1
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NZ_CP124427.1
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NZ_CP124444.1
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NZ_CP124465.1
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NZ_CP124403.1
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NZ_CP124433.1
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NZ_CP124408.1
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NZ_CP124418.1
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NZ_CP124390.1
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NZ_OZ040952.1
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NZ_OZ040467.1
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NZ_OZ040270.1
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NZ_OZ040719.1
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NZ_OZ039048.1
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NZ_CP145650.1
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NZ_CP107238.1
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NZ_CP107232.1
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NZ_AP027560.1
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NZ_CP142934.1
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NZ_CP054217.1
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AP029165.1
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NZ_CP139857.1
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NZ_CP139802.1
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NZ_CP141559.1
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NZ_CP053249.1
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CP054339.1
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NZ_MG649065.1
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NZ_AP022329.1
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NZ_CP031132.1
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NZ_CP041341.1
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NZ_LR890331.1
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NZ_LR890695.1
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NZ_LR890338.1
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CP052323.1
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NZ_CP069830.1
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NZ_CP070180.1
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NZ_CP069983.1
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NZ_CP070013.1
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NZ_CP070114.1
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NZ_CP049125.1
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NZ_CP063777.1
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NZ_AP022167.1
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NZ_CP051619.1
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NZ_AP022051.1
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NZ_AP022034.1
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NZ_AP022047.1
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NZ_AP022100.1
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NZ_AP022180.1
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NZ_AP022067.1
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NZ_AP021966.1
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NZ_AP022001.1
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NZ_AP022074.1
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NZ_OP378613.1
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NZ_OP242258.1
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NZ_CP074489.1
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NZ_CP116130.1
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NZ_CP116185.1
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NZ_CP116139.1
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NZ_CP116149.1
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NZ_CP103472.1
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NZ_CP095527.1
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NZ_CP099757.1
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NZ_CP109879.1
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NZ_CP104670.1
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NZ_CP103595.1
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NZ_CP103525.1
See Comparison
NZ_CP103483.1
See Comparison
NZ_CP091759.1
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OW967385.1
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CP090256.1
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NZ_CP051664.1
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NZ_CP091708.1
See Comparison
NZ_CP091687.1
See Comparison
CP088691.1
See Comparison
CP088686.1
See Comparison
CP088455.1
See Comparison
CP088368.1
See Comparison
AP024698.1
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NZ_CP071078.1
See Comparison
NZ_CP076696.1
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NZ_CP010879.1
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NZ_CP018967.1
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NZ_CP014318.1
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NZ_CP012637.1
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NC_022649.1
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NZ_LR130561.1
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NZ_CP034960.1
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NZ_CP035126.1
See Comparison
NZ_CP032876.1
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NZ_CP024722.1
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NZ_CP023848.1
See Comparison
NZ_CP023831.1
See Comparison
NZ_CP028586.1
See Comparison
NZ_CP135461.1
See Comparison
NZ_CP137120.1
See Comparison
NZ_CP107131.1
See Comparison
NZ_CP135669.1
See Comparison
NZ_CP135696.1
See Comparison
NZ_CP135703.1
See Comparison
CP134902.1
See Comparison
NZ_CP059334.1
See Comparison
CP136917.1
See Comparison
NZ_CP128910.1
See Comparison
NZ_CP124457.1
See Comparison
NZ_AP027568.1
See Comparison
CP125078.1
See Comparison
CP125074.1
See Comparison
CP125057.1
See Comparison
CP125048.1
See Comparison
CP124982.1
See Comparison
NZ_OZ040952.1
See Comparison
NZ_OZ040467.1
See Comparison
NZ_OZ040270.1
See Comparison
NZ_OZ040719.1
See Comparison
NZ_OZ039048.1
See Comparison
NZ_OZ039173.1
See Comparison
NZ_CP107238.1
See Comparison
NZ_CP107232.1
See Comparison
NZ_CP124412.1
See Comparison
NZ_CP124427.1
See Comparison
NZ_CP124444.1
See Comparison
NZ_CP124465.1
See Comparison
NZ_CP124403.1
See Comparison
NZ_CP124433.1
See Comparison
NZ_CP124408.1
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NZ_CP124418.1
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NZ_CP124438.1
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NZ_CP124422.1
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NZ_CP124390.1
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NZ_CP124369.1
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NZ_CP145624.1
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NZ_CP145650.1
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NZ_AP027560.1
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AP029165.1
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NZ_CP142934.1
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NZ_CP141559.1
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CP054339.1
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NZ_CP139857.1
See Comparison
NZ_CP139802.1
See Comparison
NZ_CP054217.1
See Comparison
NZ_CP054222.1
See Comparison
NZ_AP022329.1
See Comparison
NZ_MG649065.1
See Comparison
CP052323.1
See Comparison
NZ_CP069830.1
See Comparison
NZ_CP070180.1
See Comparison
NZ_CP069983.1
See Comparison
NZ_CP070013.1
See Comparison
NZ_CP070114.1
See Comparison
NZ_CP053249.1
See Comparison
CP052222.1
See Comparison
NZ_CP031132.1
See Comparison
NZ_CP041341.1
See Comparison
NZ_LR890331.1
See Comparison
NZ_LR890695.1
See Comparison
NZ_LR890338.1
See Comparison
NZ_CP049125.1
See Comparison
NZ_CP063777.1
See Comparison
NZ_AP022167.1
See Comparison
NZ_CP051619.1
See Comparison
NZ_AP022047.1
See Comparison
NZ_AP022100.1
See Comparison
NZ_AP022180.1
See Comparison
NZ_AP022067.1
See Comparison
NZ_AP021966.1
See Comparison
NZ_AP022074.1
See Comparison
NZ_AP022001.1
See Comparison
NZ_AP022051.1
See Comparison
NZ_AP022034.1
See Comparison
NZ_OP378613.1
See Comparison
NZ_CP074489.1
See Comparison
NZ_OP242258.1
See Comparison
NZ_CP116130.1
See Comparison
NZ_CP116185.1
See Comparison
NZ_CP116139.1
See Comparison
NZ_CP116149.1
See Comparison
NZ_CP099757.1
See Comparison
NZ_CP095527.1
See Comparison
NZ_CP109879.1
See Comparison
NZ_CP104670.1
See Comparison
NZ_CP091759.1
See Comparison
NZ_CP103472.1
See Comparison
NZ_CP103525.1
See Comparison
NZ_CP103483.1
See Comparison
NZ_CP103595.1
See Comparison
OW967385.1
See Comparison
CP090256.1
See Comparison
NZ_CP051664.1
See Comparison
NZ_CP091708.1
See Comparison
NZ_CP091687.1
See Comparison
CP088691.1
See Comparison
CP088686.1
See Comparison
CP088455.1
See Comparison
CP088368.1
See Comparison
AP024698.1
See Comparison
NZ_CP076696.1
See Comparison
NZ_CP034960.1
See Comparison
NZ_CP018967.1
See Comparison
NZ_CP014318.1
See Comparison
NZ_CP012637.1
See Comparison
NZ_CP071078.1
See Comparison
NZ_CP010879.1
See Comparison
NC_022649.1
See Comparison
NZ_LR130561.1
See Comparison
NZ_CP035126.1
See Comparison
NZ_CP032876.1
See Comparison
NZ_CP023848.1
See Comparison
NZ_CP023831.1
See Comparison
CP136917.1
See Comparison
NZ_CP137120.1
See Comparison
NZ_CP028586.1
See Comparison
NZ_CP024722.1
See Comparison
CP134902.1
See Comparison
NZ_CP135669.1
See Comparison
NZ_CP135696.1
See Comparison
NZ_CP135703.1
See Comparison
NZ_CP135461.1
See Comparison
NZ_CP059334.1
See Comparison
NZ_CP107131.1
See Comparison
NZ_CP124412.1
See Comparison
NZ_CP128910.1
See Comparison
NZ_CP124427.1
See Comparison
NZ_CP124444.1
See Comparison
NZ_CP124465.1
See Comparison
NZ_CP124403.1
See Comparison
NZ_CP124433.1
See Comparison
NZ_CP124408.1
See Comparison
NZ_CP124418.1
See Comparison
NZ_CP124438.1
See Comparison
CP125078.1
See Comparison
NZ_CP124422.1
See Comparison
CP125074.1
See Comparison
NZ_CP124457.1
See Comparison
NZ_AP027568.1
See Comparison
CP125057.1
See Comparison
CP125048.1
See Comparison
CP124982.1
See Comparison
NZ_OZ040952.1
See Comparison
NZ_OZ040467.1
See Comparison
NZ_CP145624.1
See Comparison
NZ_CP124390.1
See Comparison
NZ_CP124369.1
See Comparison
NZ_OZ040270.1
See Comparison
NZ_OZ040719.1
See Comparison
NZ_OZ039048.1
See Comparison
NZ_OZ039173.1
See Comparison
NZ_CP107232.1
See Comparison
NZ_AP027560.1
See Comparison
NZ_CP145650.1
See Comparison
NZ_CP107238.1
See Comparison
NZ_CP142934.1
See Comparison
AP029165.1
See Comparison
CP052323.1
See Comparison
NZ_CP054217.1
See Comparison
NZ_CP054222.1
See Comparison
NZ_CP053249.1
See Comparison
CP052222.1
See Comparison
NZ_CP141559.1
See Comparison
NZ_CP139857.1
See Comparison
NZ_CP139802.1
See Comparison
CP054339.1
See Comparison
NZ_MG649065.1
See Comparison
NZ_CP069830.1
See Comparison
NZ_CP031132.1
See Comparison
NZ_CP041341.1
See Comparison
NZ_CP070180.1
See Comparison
NZ_CP069983.1
See Comparison
NZ_CP070013.1
See Comparison
NZ_CP070114.1
See Comparison
NZ_AP022180.1
See Comparison
NZ_LR890331.1
See Comparison
NZ_LR890695.1
See Comparison
NZ_LR890338.1
See Comparison
NZ_CP063777.1
See Comparison
NZ_AP022167.1
See Comparison
NZ_AP022329.1
See Comparison
NZ_CP049125.1
See Comparison
NZ_CP051619.1
See Comparison
NZ_AP022067.1
See Comparison
NZ_AP022074.1
See Comparison
NZ_AP021966.1
See Comparison
NZ_AP022001.1
See Comparison
NZ_OP242258.1
See Comparison
NZ_AP022051.1
See Comparison
NZ_AP022034.1
See Comparison
NZ_AP022047.1
See Comparison
NZ_AP022100.1
See Comparison
NZ_OP378613.1
See Comparison
NZ_CP116185.1
See Comparison
NZ_CP074489.1
See Comparison
NZ_CP116139.1
See Comparison
NZ_CP116149.1
See Comparison
NZ_CP095527.1
See Comparison
NZ_CP116130.1
See Comparison
NZ_CP103472.1
See Comparison
NZ_CP099757.1
See Comparison
NZ_CP109879.1
See Comparison
NZ_CP104670.1
See Comparison
NZ_CP103525.1
See Comparison
NZ_CP103483.1
See Comparison
NZ_CP103595.1
See Comparison
OW967385.1
See Comparison
NZ_CP051664.1
See Comparison
NZ_CP091708.1
See Comparison
NZ_CP091687.1
See Comparison
NZ_CP091759.1
See Comparison
NZ_CP071078.1
See Comparison
CP090256.1
See Comparison
CP088691.1
See Comparison
CP088686.1
See Comparison
CP088455.1
See Comparison
CP088368.1
See Comparison
AP024698.1
See Comparison
NZ_CP076696.1
See Comparison
NZ_CP010879.1
See Comparison
NZ_CP018967.1
See Comparison
NZ_CP014318.1
See Comparison
NZ_CP012637.1
See Comparison
NC_022649.1
See Comparison
NZ_LR130561.1
See Comparison
NZ_CP023848.1
See Comparison
NZ_CP034960.1
See Comparison
NZ_CP035126.1
See Comparison
NZ_CP023831.1
See Comparison
NZ_CP137120.1
See Comparison
NZ_CP032876.1
See Comparison
NZ_CP028586.1
See Comparison
NZ_CP024722.1
See Comparison
NZ_CP059334.1
See Comparison
NZ_CP135669.1
See Comparison
NZ_CP135696.1
See Comparison
NZ_CP135703.1
See Comparison
NZ_CP135461.1
See Comparison
CP136917.1
See Comparison
CP134902.1
See Comparison
CP125078.1
See Comparison
NZ_CP107131.1
See Comparison
NZ_CP124412.1
See Comparison
NZ_CP124427.1
See Comparison
NZ_CP124444.1
See Comparison
NZ_CP124465.1
See Comparison
NZ_CP124403.1
See Comparison
NZ_CP124433.1
See Comparison
NZ_CP124408.1
See Comparison
NZ_CP124418.1
See Comparison
NZ_CP124438.1
See Comparison
NZ_CP124422.1
See Comparison
NZ_CP124457.1
See Comparison
NZ_CP128910.1
See Comparison
CP125074.1
See Comparison
CP125057.1
See Comparison
CP125048.1
See Comparison
CP124982.1
See Comparison
NZ_OZ040952.1
See Comparison
NZ_CP124390.1
See Comparison
NZ_CP124369.1
See Comparison
NZ_OZ040719.1
See Comparison
NZ_OZ039048.1
See Comparison
NZ_OZ039173.1
See Comparison
NZ_OZ040467.1
See Comparison
NZ_OZ040270.1
See Comparison
NZ_CP145650.1
See Comparison
NZ_CP107232.1
See Comparison
NZ_CP107238.1
See Comparison
NZ_CP145624.1
See Comparison
NZ_CP141559.1
See Comparison
NZ_AP027568.1
See Comparison
NZ_AP027560.1
See Comparison
AP029165.1
See Comparison
NZ_CP142934.1
See Comparison
CP052323.1
See Comparison
NZ_CP054217.1
See Comparison
NZ_CP054222.1
See Comparison
NZ_CP139857.1
See Comparison
NZ_CP139802.1
See Comparison
CP054339.1
See Comparison
NZ_MG649065.1
See Comparison
NZ_CP053249.1
See Comparison
CP052222.1
See Comparison
NZ_CP069830.1
See Comparison
NZ_CP031132.1
See Comparison
NZ_CP041341.1
See Comparison
NZ_CP070180.1
See Comparison
NZ_CP069983.1
See Comparison
NZ_CP070013.1
See Comparison
NZ_CP070114.1
See Comparison
NZ_LR890331.1
See Comparison
NZ_LR890695.1
See Comparison
NZ_LR890338.1
See Comparison
NZ_CP063777.1
See Comparison
NZ_AP022329.1
See Comparison
NZ_AP022167.1
See Comparison
NZ_CP049125.1
See Comparison
NZ_AP021966.1
See Comparison
NZ_CP051619.1
See Comparison
NZ_AP022074.1
See Comparison
NZ_AP022051.1
See Comparison
NZ_AP022034.1
See Comparison
NZ_CP116139.1
See Comparison
NZ_AP022047.1
See Comparison
NZ_AP022100.1
See Comparison
NZ_AP022180.1
See Comparison
NZ_AP022067.1
See Comparison
NZ_AP022001.1
See Comparison
NZ_OP378613.1
See Comparison
NZ_OP242258.1
See Comparison
NZ_CP109879.1
See Comparison
NZ_CP074489.1
See Comparison
NZ_CP116149.1
See Comparison
NZ_CP116130.1
See Comparison
NZ_CP116185.1
See Comparison
NZ_CP095527.1
See Comparison
NZ_CP099757.1
See Comparison
NZ_CP104670.1
See Comparison
NZ_CP103525.1
See Comparison
NZ_CP103483.1
See Comparison
NZ_CP103595.1
See Comparison
NZ_CP103472.1
See Comparison
OW967385.1
See Comparison
NZ_CP091759.1
See Comparison
NZ_CP091708.1
See Comparison
NZ_CP091687.1
See Comparison
NZ_CP051664.1
See Comparison
Identical Plasmids
100% Sequence Identity
NZ_CP137120.1
Sequence
Accession
:
NZ_CP137120.1
Description
: Citrobacter freundii strain F2119 plasmid pF2119-4, complete sequence
Source
: refseq
Created at NCBI
: Nov. 1, 2023
Host Taxonomy
Assigned Host
:
Citrobacter freundii (546)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Citrobacter (544)
Species
:
Citrobacter_freundii (546)
Strain
:
Biosample
Accession
:
37878025
GEOGRAPHICAL INFORMATION
Original Query
: 29.86N;121.56E
Original Query Type
: coordinates
Address
: Baihe, Yinzhou District, Ningbo, Zhejiang, 315000, China
Coordinates
(Lat/Lon): 29.86/121.56
ECOSYSTEM
Original Query
: Homo sapiens,urine
Classification
: host_associated,urinary_system
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Malignant tumor
DOID/SYMP
:
Cancer
(
DOID:162
)
A disease of cellular proliferation that is malignant and primary, characterized by uncontrolled cellular proliferation, local cell invasion and metastasis.
Visualization
PNG
JSON
NZ_LR890695.1
Sequence
Accession
:
NZ_LR890695.1
Description
: Escherichia coli strain MSB1_4E isolate MSB1_4E plasmid 3, complete sequence
Source
: refseq
Created at NCBI
: Oct. 30, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
4089335
GEOGRAPHICAL INFORMATION
Original Query
: Australia
Original Query Type
: name
Address
: Australia
Coordinates
(Lat/Lon): -24.78/134.76
ECOSYSTEM
Original Query
: Homo sapiens,rectal swab
Classification
: gastrointestinal_system,host_associated,rectal
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP054217.1
Sequence
Accession
:
NZ_CP054217.1
Description
: Escherichia coli strain EcPF40 plasmid p3, complete sequence
Source
: refseq
Created at NCBI
: June 25, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
15075998
GEOGRAPHICAL INFORMATION
Original Query
: 32.77N;96.79W
Original Query Type
: coordinates
Address
: 1611, Browder Street, Dallas, Dallas County, Texas, 75215, United States
Coordinates
(Lat/Lon): 32.77/-96.79
ECOSYSTEM
Original Query
: Homo sapiens,urine
Classification
: host_associated,urinary_system
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Chronic Cystitis
DOID/SYMP
:
Chronic cystitis
(
DOID:1680
)
None
Visualization
PNG
JSON
NZ_CP054222.1
Sequence
Accession
:
NZ_CP054222.1
Description
: Escherichia coli strain EcPF18 plasmid p3, complete sequence
Source
: refseq
Created at NCBI
: June 25, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
15075997
GEOGRAPHICAL INFORMATION
Original Query
: 32.77N;96.79W
Original Query Type
: coordinates
Address
: 1611, Browder Street, Dallas, Dallas County, Texas, 75215, United States
Coordinates
(Lat/Lon): 32.77/-96.79
ECOSYSTEM
Original Query
: Homo sapiens,urine
Classification
: host_associated,urinary_system
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Chronic Cystitis
DOID/SYMP
:
Chronic cystitis
(
DOID:1680
)
None
Visualization
PNG
JSON
NZ_CP074489.1
Sequence
Accession
:
NZ_CP074489.1
Description
: Escherichia coli strain S7_CRE7 plasmid pCRE7_3, complete sequence
Source
: refseq
Created at NCBI
: Feb. 1, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16387627
GEOGRAPHICAL INFORMATION
Original Query
: 36.0075N;78.9384W
Original Query Type
: coordinates
Address
: Duke University Hospital, 2301, Erwin Road, Crest Street, Durham, Durham County, North Carolina, 27710, United States
Coordinates
(Lat/Lon): 36.01/-78.94
ECOSYSTEM
Original Query
: Homo sapiens,abdominal fluid JP drain
Classification
: abdominal,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Bacterial infection
DOID/SYMP
:
Bacterial infectious disease
(
DOID:104
)
A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
Has_material_basis_in: ['bacteria']
Visualization
PNG
JSON
NZ_OP242258.1
Sequence
Accession
:
NZ_OP242258.1
Description
: Escherichia coli strain LA041 plasmid pLAO25, complete sequence
Source
: refseq
Created at NCBI
: Feb. 13, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
29363379
GEOGRAPHICAL INFORMATION
Original Query
: 17.962460N;102.613180E
Original Query Type
: coordinates
Address
: Rue Mahosot, Nongchanh, Vientiane Capital, Sisattanak District, Vientiane Prefecture, 01006, Laos
Coordinates
(Lat/Lon): 17.96/102.61
ECOSYSTEM
Original Query
: Homo sapiens,stool
Classification
: fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP107232.1
Sequence
Accession
:
NZ_CP107232.1
Description
: Escherichia coli strain REF2 plasmid pREF2-1179-2, complete sequence
Source
: refseq
Created at NCBI
: April 5, 2024
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
31158899
GEOGRAPHICAL INFORMATION
Original Query
: Sweden,Gothenburg
Original Query Type
: name
Address
: Sweden,Gothenburg
Coordinates
(Lat/Lon): 57.71/11.97
ECOSYSTEM
Original Query
: Faeces,human
Classification
: fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP135696.1
Sequence
Accession
:
NZ_CP135696.1
Description
: Escherichia coli strain TUM2802 plasmid pMTY2802_Col2, complete sequence
Source
: refseq
Created at NCBI
: Oct. 7, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35768982
GEOGRAPHICAL INFORMATION
Original Query
: Japan
Original Query Type
: name
Address
: Japan
Coordinates
(Lat/Lon): 36.57/139.24
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP135703.1
Sequence
Accession
:
NZ_CP135703.1
Description
: Escherichia coli strain TUM2367 plasmid pMTY2367_Col2, complete sequence
Source
: refseq
Created at NCBI
: Oct. 7, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35768963
GEOGRAPHICAL INFORMATION
Original Query
: Japan
Original Query Type
: name
Address
: Japan
Coordinates
(Lat/Lon): 36.57/139.24
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP135669.1
Sequence
Accession
:
NZ_CP135669.1
Description
: Escherichia coli strain TUM9975 plasmid pMTY9975_Col, complete sequence
Source
: refseq
Created at NCBI
: Oct. 7, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35769058
GEOGRAPHICAL INFORMATION
Original Query
: Japan
Original Query Type
: name
Address
: Japan
Coordinates
(Lat/Lon): 36.57/139.24
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP135461.1
Sequence
Accession
:
NZ_CP135461.1
Description
: Escherichia coli strain isolateI plasmid pIsolateI_C, complete sequence
Source
: refseq
Created at NCBI
: Oct. 7, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
37529180
GEOGRAPHICAL INFORMATION
Original Query
: Canada,Ottawa
Original Query Type
: name
Address
: Canada,Ottawa
Coordinates
(Lat/Lon): 45.42/-75.69
ECOSYSTEM
Original Query
: Homo sapiens,bacterial culture
Classification
: cell_culture,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP128910.1
Sequence
Accession
:
NZ_CP128910.1
Description
: Escherichia coli strain TUM13881 plasmid pMTY13881_Col156, complete sequence
Source
: refseq
Created at NCBI
: July 7, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
35654555
GEOGRAPHICAL INFORMATION
Original Query
: Japan
Original Query Type
: name
Address
: Japan
Coordinates
(Lat/Lon): 36.57/139.24
ECOSYSTEM
Original Query
: Homo sapiens,drain drainage
Classification
: host_associated,wastewater
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP124412.1
Sequence
Accession
:
NZ_CP124412.1
Description
: Escherichia coli strain AVS0543 plasmid pAVS0543-B, complete sequence
Source
: refseq
Created at NCBI
: May 21, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360976
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: environmental: river near WWTP effluent
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124427.1
Sequence
Accession
:
NZ_CP124427.1
Description
: Escherichia coli strain AVS0247 plasmid pAVS0247-C, complete sequence
Source
: refseq
Created at NCBI
: May 21, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360972
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: environmental: river/lake
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124444.1
Sequence
Accession
:
NZ_CP124444.1
Description
: Escherichia coli strain AVS0196 plasmid pAVS0196-B, complete sequence
Source
: refseq
Created at NCBI
: May 21, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360969
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: environmental: river near WWTP effluent
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124465.1
Sequence
Accession
:
NZ_CP124465.1
Description
: Escherichia coli strain AVS0947 plasmid pAVS0947-E, complete sequence
Source
: refseq
Created at NCBI
: May 21, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360966
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: environmental: river/lake
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124433.1
Sequence
Accession
:
NZ_CP124433.1
Description
: Escherichia coli strain AVS0051 plasmid pAVS0051-D, complete sequence
Source
: refseq
Created at NCBI
: May 21, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360971
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: environmental: river/lake
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124408.1
Sequence
Accession
:
NZ_CP124408.1
Description
: Escherichia coli strain AVS0935 plasmid pAVS0935-C, complete sequence
Source
: refseq
Created at NCBI
: May 21, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360977
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: environmental: river near WWTP effluent
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124418.1
Sequence
Accession
:
NZ_CP124418.1
Description
: Escherichia coli strain AVS0223 plasmid pAVS0223-C, complete sequence
Source
: refseq
Created at NCBI
: May 21, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360974
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: environmental: river near WWTP effluent
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124438.1
Sequence
Accession
:
NZ_CP124438.1
Description
: Escherichia coli strain AVS0790 plasmid pAVS0790-B, complete sequence
Source
: refseq
Created at NCBI
: May 21, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360970
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: wastewater efflux
Classification
: wastewater
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124422.1
Sequence
Accession
:
NZ_CP124422.1
Description
: Escherichia coli strain AVS0155 plasmid pAVS0155-B, complete sequence
Source
: refseq
Created at NCBI
: May 21, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360973
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: environmental: river near WWTP effluent
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124457.1
Sequence
Accession
:
NZ_CP124457.1
Description
: Escherichia coli strain AVS0193 plasmid pAVS0193-B, complete sequence
Source
: refseq
Created at NCBI
: May 21, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360967
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: environmental: river near WWTP effluent
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124390.1
Sequence
Accession
:
NZ_CP124390.1
Description
: Escherichia coli strain AVS0972 plasmid pAVS0972-C, complete sequence
Source
: refseq
Created at NCBI
: May 14, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360981
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: wastewater
Classification
: wastewater
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP124369.1
Sequence
Accession
:
NZ_CP124369.1
Description
: Escherichia coli strain AVS0465 plasmid pAVS0465-B, complete sequence
Source
: refseq
Created at NCBI
: May 14, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34360985
GEOGRAPHICAL INFORMATION
Original Query
: Switzerland,Kanton Zug
Original Query Type
: name
Address
: Switzerland,Kanton Zug
Coordinates
(Lat/Lon): 47.15/8.55
ECOSYSTEM
Original Query
: environmental: river near WWTP effluent
Classification
: aquatic,freshwater,river
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP051664.1
Sequence
Accession
:
NZ_CP051664.1
Description
: Escherichia coli strain 1162invT2 plasmid pEco1162invT2a, complete sequence
Source
: refseq
Created at NCBI
: Jan. 19, 2022
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
14611936
GEOGRAPHICAL INFORMATION
Original Query
: Mexico,Mexico City
Original Query Type
: name
Address
: Mexico,Mexico City
Coordinates
(Lat/Lon): 19.43/-99.13
ECOSYSTEM
Original Query
: Homo sapiens,cell culture,urine
Classification
: cell_culture,host_associated,urinary_system
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP063777.1
Sequence
Accession
:
NZ_CP063777.1
Description
: Escherichia coli O25b:H4-ST131 plasmid pHK02-3, complete sequence
Source
: refseq
Created at NCBI
: Nov. 10, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (941322)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
16520835
GEOGRAPHICAL INFORMATION
Original Query
: Hong Kong
Original Query Type
: name
Address
: Hong Kong
Coordinates
(Lat/Lon): 22.35/114.18
ECOSYSTEM
Original Query
: single cell,wastewater
Classification
: cell_culture,wastewater
Host-associated Taxon
:
Visualization
PNG
JSON
NZ_CP051619.1
Sequence
Accession
:
NZ_CP051619.1
Description
: Escherichia coli O25b:H4-ST131 strain 2017_APHA plasmid pAPHA_2017_4, complete sequence
Source
: refseq
Created at NCBI
: Aug. 18, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (941322)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
14594834
GEOGRAPHICAL INFORMATION
Original Query
: United Kingdom
Original Query Type
: name
Address
: United Kingdom
Coordinates
(Lat/Lon): 54.70/-3.28
ECOSYSTEM
Original Query
: Pig,Bacterial culture,cecal sample
Classification
: cecal,cell_culture,gastrointestinal_system,host_associated
Host-associated Taxon
:
Sus scrofa (
9823
)
Visualization
PNG
JSON
NZ_CP028586.1
Sequence
Accession
:
NZ_CP028586.1
Description
: Escherichia coli strain WCHEC4533 plasmid p2_000533, complete sequence
Source
: refseq
Created at NCBI
: April 5, 2018
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
6909152
GEOGRAPHICAL INFORMATION
Original Query
: China,Sichuan,Chengdu
Original Query Type
: name
Address
: China,Sichuan,Chengdu
Coordinates
(Lat/Lon): 30.68/104.06
ECOSYSTEM
Original Query
: Homo sapiens,Culture
Classification
: cell_culture,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP032876.1
Sequence
Accession
:
NZ_CP032876.1
Description
: Escherichia coli strain WCHEC000837 plasmid p2_000837, complete sequence
Source
: refseq
Created at NCBI
: Oct. 10, 2018
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
6231252
GEOGRAPHICAL INFORMATION
Original Query
: China,Sichuan,Chengdu
Original Query Type
: name
Address
: China,Sichuan,Chengdu
Coordinates
(Lat/Lon): 30.68/104.06
ECOSYSTEM
Original Query
: Homo sapiens,Culture
Classification
: cell_culture,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP031132.1
Sequence
Accession
:
NZ_CP031132.1
Description
: Escherichia coli strain WCHEC96200 plasmid p2_000200, complete sequence
Source
: refseq
Created at NCBI
: April 20, 2020
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
6909153
GEOGRAPHICAL INFORMATION
Original Query
: China,Sichuan,Chengdu
Original Query Type
: name
Address
: China,Sichuan,Chengdu
Coordinates
(Lat/Lon): 30.68/104.06
ECOSYSTEM
Original Query
: Homo sapiens,Culture
Classification
: cell_culture,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
Visualization
PNG
JSON
NZ_CP145624.1
Sequence
Accession
:
NZ_CP145624.1
Description
: Escherichia coli strain S1-ESP-02-A plasmid p2-S1-ESP-02-A, complete sequence
Source
: refseq
Created at NCBI
: April 5, 2024
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
CP125057.1
Sequence
Accession
:
CP125057.1
Description
: Escherichia coli strain KFS-C08 plasmid pKFS-C08_4, complete sequence
Source
: insd
Created at NCBI
: May 16, 2023
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
34598742
GEOGRAPHICAL INFORMATION
Original Query
: 0.19N;32.35E
Original Query Type
: coordinates
Address
: Senene Buzingu, Mpigi, Central Region, Uganda
Coordinates
(Lat/Lon): 0.19/32.35
ECOSYSTEM
Original Query
: Fecal sludge
Classification
: fecal,gastrointestinal_system,host_associated
Host-associated Taxon
:
Visualization
PNG
JSON
CP052222.1
Sequence
Accession
:
CP052222.1
Description
: Klebsiella pneumoniae strain E17KP0053 plasmid pE17KP0053-5, complete sequence
Source
: insd
Created at NCBI
: May 4, 2020
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
14609948
GEOGRAPHICAL INFORMATION
Original Query
: 34.87N;126.99E
Original Query Type
: coordinates
Address
: Yulgye-ri, Hwasun-gun, South Jeolla, 58165, South Korea
Coordinates
(Lat/Lon): 34.87/126.99
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Bloodstream infection
DOID/SYMP
:
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
PNG
JSON
CP052323.1
Sequence
Accession
:
CP052323.1
Description
: Klebsiella pneumoniae strain E16KP0035 plasmid pE16KP0035-3, complete sequence
Source
: insd
Created at NCBI
: May 4, 2020
Host Taxonomy
Assigned Host
:
Klebsiella pneumoniae (573)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Klebsiella (570)
Species
:
Klebsiella_pneumoniae (573)
Strain
:
Biosample
Accession
:
14609921
GEOGRAPHICAL INFORMATION
Original Query
: 34.87N;126.99E
Original Query Type
: coordinates
Address
: Yulgye-ri, Hwasun-gun, South Jeolla, 58165, South Korea
Coordinates
(Lat/Lon): 34.87/126.99
ECOSYSTEM
Original Query
: Homo sapiens,blood
Classification
: blood,circulatory_system,host_associated
Host-associated Taxon
:
Homo sapiens (
9606
)
DISEASE
Original Query
: Bloodstream infection
DOID/SYMP
:
Disease infectious agent
(
DOID:0050117
)
A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.
Visualization
PNG
JSON
AP029165.1
Sequence
Accession
:
AP029165.1
Description
: Escherichia coli KA0011 plasmid pKA0011-2 DNA, complete sequence
Source
: insd
Created at NCBI
: Feb. 8, 2024
Host Taxonomy
Assigned Host
:
Escherichia coli (562)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Escherichia (561)
Species
:
Escherichia_coli (562)
Strain
:
Biosample
Accession
:
39857502
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: None
Classification
: None
Host-associated Taxon
:
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
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Sequence
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NUCCORE ACC
Source
Element Name
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Sequence
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
Detected typing markers by plasmidfinder
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2
NUCCORE ACC
Typing
Identity
Coverage
Start
End
Strand
HSP length
Template length
Position in ref
Positions in Contig
Note
Accession
Hit id
Organism L1
Organism L2