Plasmid NZ_CP116129.1

Sequence

Nucleotide Information

Accession NZ_CP116129.1
Description Escherichia coli strain DETEC-P666 plasmid pDETEC26, complete sequence
Source refseq
Topology circular
Length 5775 bp
GC Content 0.50 %
Created at NCBI Jan. 25, 2023



Assembly

Genome Data Information

Accession GCF_027944795.1
Assembly Coverage 10


Biosample

Curated Collection Information
Accession 31988472

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query China,Guangzhou
Original Query Type name
Coordinates (Lat/Lon) 23.13/113.26
Address China,Guangzhou

ECOSYSTEM
Original Query whole organism,ICU patient oral swab
Classification disease,host_associated,oral
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP122590.1 See Comparison
CP122744.1 See Comparison
CP122737.1 See Comparison
CP057310.1 See Comparison
CP057301.1 See Comparison
NZ_CP051611.1 See Comparison
NZ_CP116138.1 See Comparison
CP122744.1 See Comparison
NZ_CP127261.1 See Comparison
NZ_CP122590.1 See Comparison
CP122737.1 See Comparison
NZ_CP051611.1 See Comparison
CP057310.1 See Comparison
CP057301.1 See Comparison
NZ_CP127261.1 See Comparison
NZ_CP116138.1 See Comparison
NZ_CP122590.1 See Comparison
CP057310.1 See Comparison
CP122744.1 See Comparison
CP122737.1 See Comparison
CP057301.1 See Comparison
NZ_CP116138.1 See Comparison
NZ_CP051611.1 See Comparison
NZ_CP122590.1 See Comparison
NZ_CP127261.1 See Comparison
CP057310.1 See Comparison
CP122744.1 See Comparison
CP122737.1 See Comparison
CP057301.1 See Comparison
NZ_CP051611.1 See Comparison
CP057310.1 See Comparison
CP122744.1 See Comparison
CP122737.1 See Comparison
NZ_CP116138.1 See Comparison
NZ_CP127261.1 See Comparison
NZ_CP122590.1 See Comparison
CP057301.1 See Comparison
NZ_CP051611.1 See Comparison
NZ_CP116129.1 See Comparison
NZ_CP116138.1 See Comparison
CP122744.1 See Comparison
NZ_CP127261.1 See Comparison
NZ_CP122590.1 See Comparison
CP122737.1 See Comparison
NZ_CP051611.1 See Comparison
CP057310.1 See Comparison
CP057301.1 See Comparison
NZ_CP116138.1 See Comparison
NZ_CP127261.1 See Comparison
CP057310.1 See Comparison
NZ_CP122590.1 See Comparison
CP122744.1 See Comparison
CP122737.1 See Comparison
CP057301.1 See Comparison
NZ_CP051611.1 See Comparison
NZ_CP116138.1 See Comparison
NZ_CP127261.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2