Plasmid NZ_CP104545.1

Sequence

Nucleotide Information

Accession NZ_CP104545.1
Description Escherichia coli strain E6 plasmid p6, complete sequence
Source refseq
Topology circular
Length 4593 bp
GC Content 0.50 %
Created at NCBI Sept. 24, 2022



Assembly

Genome Data Information

Accession GCF_025369915.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 30789309

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Poultry,Broiler
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query E. coli yolk sac infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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OW969874.1 See Comparison
OW968286.1 See Comparison
OW967766.1 See Comparison
NZ_CP080062.1 See Comparison
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CP082510.1 See Comparison
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NZ_CP012684.1 See Comparison
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NZ_CP042591.1 See Comparison
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NZ_CP025244.1 See Comparison
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NZ_CP149302.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_AP027861.1 See Comparison
CP140740.1 See Comparison
CP056959.1 See Comparison
NZ_CP122925.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_CP149384.1 See Comparison
CP057939.1 See Comparison
CP057629.1 See Comparison
LR792483.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP035550.1 See Comparison
NZ_CP051336.1 See Comparison
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NZ_CP043666.1 See Comparison
CP048864.1 See Comparison
NZ_CP051418.1 See Comparison
NZ_CP062856.1 See Comparison
CP098950.1 See Comparison
CP099157.1 See Comparison
CP099163.1 See Comparison
CP099196.1 See Comparison
CP119509.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
OW967766.1 See Comparison
NZ_CP100731.1 See Comparison
NZ_CP100714.1 See Comparison
OW969874.1 See Comparison
NZ_CP080062.1 See Comparison
NZ_CP092013.1 See Comparison
NZ_CP092005.1 See Comparison
NZ_CP012684.1 See Comparison
OW968286.1 See Comparison
NZ_CP090136.1 See Comparison
NZ_CP090144.1 See Comparison
CP088361.1 See Comparison
CP082633.1 See Comparison
CP082441.1 See Comparison
CP082510.1 See Comparison
NZ_AP024120.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP025244.1 See Comparison
NZ_CP042591.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP039573.1 See Comparison
NZ_CP030004.1 See Comparison
OX345627.1 See Comparison
NZ_CP133421.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP065130.1 See Comparison
CP140740.1 See Comparison
NZ_CP082079.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP122925.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_CP149384.1 See Comparison
NZ_AP027861.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149396.1 See Comparison
AP020331.1 See Comparison
CP057939.1 See Comparison
CP057629.1 See Comparison
CP056959.1 See Comparison
LR792483.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP035550.1 See Comparison
NZ_CP062856.1 See Comparison
NZ_CP051336.1 See Comparison
NZ_CP051418.1 See Comparison
NZ_CP043668.1 See Comparison
NZ_CP043666.1 See Comparison
CP098950.1 See Comparison
CP048864.1 See Comparison
CP099157.1 See Comparison
CP099163.1 See Comparison
CP099196.1 See Comparison
NZ_CP117608.1 See Comparison
CP119509.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
NZ_CP100731.1 See Comparison
NZ_CP100714.1 See Comparison
OW968286.1 See Comparison
OW969874.1 See Comparison
OW967766.1 See Comparison
NZ_CP012684.1 See Comparison
NZ_CP080062.1 See Comparison
NZ_CP092013.1 See Comparison
NZ_CP092005.1 See Comparison
NZ_CP090136.1 See Comparison
NZ_CP090144.1 See Comparison
CP082633.1 See Comparison
NZ_AP024120.1 See Comparison
CP088361.1 See Comparison
CP082441.1 See Comparison
CP082510.1 See Comparison
NZ_CP025244.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_CP042591.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP039573.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP030004.1 See Comparison
NZ_CP133421.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP065130.1 See Comparison
OX345627.1 See Comparison
LR792483.1 See Comparison
NZ_CP149384.1 See Comparison
NZ_AP027861.1 See Comparison
CP140740.1 See Comparison
CP057939.1 See Comparison
CP057629.1 See Comparison
CP056959.1 See Comparison
NZ_CP082079.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP122925.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149393.1 See Comparison
AP020331.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP035550.1 See Comparison
NZ_CP043668.1 See Comparison
NZ_CP043666.1 See Comparison
NZ_CP051336.1 See Comparison
NZ_CP062856.1 See Comparison
NZ_CP051418.1 See Comparison
CP098950.1 See Comparison
CP048864.1 See Comparison
CP099157.1 See Comparison
CP099163.1 See Comparison
CP099196.1 See Comparison
NZ_CP117608.1 See Comparison
CP119509.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
NZ_CP090136.1 See Comparison
NZ_CP080062.1 See Comparison
NZ_CP100731.1 See Comparison
NZ_CP100714.1 See Comparison
OW969874.1 See Comparison
OW968286.1 See Comparison
OW967766.1 See Comparison
NZ_CP090144.1 See Comparison
CP088361.1 See Comparison
CP082633.1 See Comparison
NZ_CP092013.1 See Comparison
NZ_CP092005.1 See Comparison
CP082441.1 See Comparison
CP082510.1 See Comparison
NZ_AP024120.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP012684.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_CP025244.1 See Comparison
NZ_CP042591.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP039573.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP030004.1 See Comparison
NZ_CP107190.1 See Comparison
OX345627.1 See Comparison
NZ_CP133421.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP065130.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP082079.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP122925.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_CP149384.1 See Comparison
NZ_AP027861.1 See Comparison
NZ_CP043668.1 See Comparison
CP140740.1 See Comparison
LR792483.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP035550.1 See Comparison
CP057939.1 See Comparison
CP057629.1 See Comparison
CP056959.1 See Comparison
AP020331.1 See Comparison
NZ_CP043666.1 See Comparison
NZ_CP051418.1 See Comparison
NZ_CP051336.1 See Comparison
NZ_CP062856.1 See Comparison
CP048864.1 See Comparison
CP119509.1 See Comparison
CP098950.1 See Comparison
CP099157.1 See Comparison
CP099163.1 See Comparison
CP099196.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
OW969874.1 See Comparison
NZ_CP080062.1 See Comparison
OW968286.1 See Comparison
OW967766.1 See Comparison
NZ_CP092013.1 See Comparison
NZ_CP092005.1 See Comparison
NZ_CP090136.1 See Comparison
NZ_CP100731.1 See Comparison
NZ_CP100714.1 See Comparison
NZ_CP090144.1 See Comparison
CP088361.1 See Comparison
CP082510.1 See Comparison
NZ_AP024120.1 See Comparison
CP082633.1 See Comparison
CP082441.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_CP012684.1 See Comparison
NZ_CP042591.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP039573.1 See Comparison
NZ_CP025244.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP030004.1 See Comparison
OX345627.1 See Comparison
NZ_CP133421.1 See Comparison
NZ_CP082079.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP065130.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP122925.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149384.1 See Comparison
CP057939.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
CP140740.1 See Comparison
CP057629.1 See Comparison
NZ_CP043668.1 See Comparison
CP056959.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP035550.1 See Comparison
NZ_AP027861.1 See Comparison
AP020331.1 See Comparison
LR792483.1 See Comparison
NZ_CP043666.1 See Comparison
NZ_CP062856.1 See Comparison
NZ_CP051336.1 See Comparison
NZ_CP051418.1 See Comparison
CP119509.1 See Comparison
CP048864.1 See Comparison
CP098950.1 See Comparison
CP099157.1 See Comparison
CP099163.1 See Comparison
CP099196.1 See Comparison
NZ_CP100731.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
NZ_CP104545.1 See Comparison
NZ_CP100714.1 See Comparison
OW969874.1 See Comparison
OW967766.1 See Comparison
OW968286.1 See Comparison
NZ_CP025244.1 See Comparison
NZ_CP080062.1 See Comparison
NZ_CP090136.1 See Comparison
NZ_CP090144.1 See Comparison
CP082633.1 See Comparison
CP082441.1 See Comparison
CP082510.1 See Comparison
NZ_AP024120.1 See Comparison
NZ_CP012684.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP042591.1 See Comparison
NZ_CP092013.1 See Comparison
NZ_CP092005.1 See Comparison
CP088361.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP039573.1 See Comparison
OX345627.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP030004.1 See Comparison
NZ_CP133421.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP065130.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP082079.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP122925.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149384.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_AP027861.1 See Comparison
CP140740.1 See Comparison
NZ_CP062856.1 See Comparison
CP057939.1 See Comparison
CP057629.1 See Comparison
NZ_CP035550.1 See Comparison
NZ_CP043668.1 See Comparison
NZ_CP043666.1 See Comparison
NZ_CP051418.1 See Comparison
CP056959.1 See Comparison
AP020331.1 See Comparison
LR792483.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP051336.1 See Comparison
CP048864.1 See Comparison
CP098950.1 See Comparison
CP099157.1 See Comparison
CP099163.1 See Comparison
CP099196.1 See Comparison
CP119509.1 See Comparison
NZ_CP116140.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP116131.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore