Plasmid NZ_CP104543.1

Sequence

Nucleotide Information

Accession NZ_CP104543.1
Description Escherichia coli strain E6 plasmid p4, complete sequence
Source refseq
Topology circular
Length 6647 bp
GC Content 0.49 %
Created at NCBI Sept. 24, 2022



Assembly

Genome Data Information

Accession GCF_025369915.1
Assembly Coverage None


Biosample

Curated Collection Information
Accession 30789309

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA
Original Query Type name
Coordinates (Lat/Lon) 39.78/-100.45
Address USA

ECOSYSTEM
Original Query Poultry,Broiler
Classification host_associated
Host-associated Taxon
  • Gallus gallus (9031)

DISEASE
Original Query E. coli yolk sac infection
DOID/SYMP
  • Bacterial infectious disease (DOID:104 )
    • A disease by infectious agent that results_in infection, has_material_basis_in Bacteria.
    • Has_material_basis_in: ['bacteria']

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP074037.1 See Comparison
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NZ_CP116092.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP074023.1 See Comparison
OW849392.1 See Comparison
NZ_OW968279.1 See Comparison
NZ_CP080060.1 See Comparison
OW849287.1 See Comparison
NZ_CP099724.1 See Comparison
NZ_CP053653.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP087577.1 See Comparison
NZ_AP024129.1 See Comparison
OW849281.1 See Comparison
OW849254.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP055117.1 See Comparison
NZ_CP091536.1 See Comparison
CP090271.1 See Comparison
NZ_MN868651.1 See Comparison
NZ_CP016519.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP122912.1 See Comparison
OY856298.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_OZ038592.1 See Comparison
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NZ_CP149310.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP055679.1 See Comparison
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CP057414.1 See Comparison
NZ_AP027656.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP047581.1 See Comparison
CP066199.1 See Comparison
CP063733.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_OP242316.1 See Comparison
NZ_CP087292.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_OW968279.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP099724.1 See Comparison
NZ_CP080060.1 See Comparison
OW849254.1 See Comparison
OW849392.1 See Comparison
NZ_CP097202.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP055117.1 See Comparison
NZ_CP087577.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_MN868651.1 See Comparison
CP090271.1 See Comparison
NZ_AP024129.1 See Comparison
NZ_CP016519.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP053653.1 See Comparison
NZ_CP041097.1 See Comparison
NZ_CP122912.1 See Comparison
OY856298.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_OZ038592.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP055679.1 See Comparison
CP057624.1 See Comparison
CP057414.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_AP027656.1 See Comparison
NZ_OP242316.1 See Comparison
NZ_CP103335.1 See Comparison
CP066199.1 See Comparison
CP063733.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_CP087292.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP074023.1 See Comparison
OW849287.1 See Comparison
NZ_OW968279.1 See Comparison
NZ_CP080060.1 See Comparison
OW849254.1 See Comparison
NZ_CP099724.1 See Comparison
OW849392.1 See Comparison
OW849281.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP055117.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_MN868651.1 See Comparison
NZ_CP010175.1 See Comparison
CP090271.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP087577.1 See Comparison
NZ_AP024129.1 See Comparison
NZ_CP053653.1 See Comparison
NZ_OZ038592.1 See Comparison
NZ_CP122912.1 See Comparison
NZ_CP016519.1 See Comparison
NZ_CP041097.1 See Comparison
OY856298.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_OZ040493.1 See Comparison
NZ_AP027656.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP055679.1 See Comparison
CP057624.1 See Comparison
CP057414.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_OP242316.1 See Comparison
CP063733.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_CP087292.1 See Comparison
CP066199.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_CP099724.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_OW968279.1 See Comparison
NZ_CP080060.1 See Comparison
OW849254.1 See Comparison
OW849392.1 See Comparison
NZ_CP087577.1 See Comparison
NZ_CP054981.1 See Comparison
NZ_CP055117.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_MN868651.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
NZ_CP097202.1 See Comparison
CP090271.1 See Comparison
NZ_AP024129.1 See Comparison
NZ_CP053653.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_AP027656.1 See Comparison
NZ_CP016519.1 See Comparison
NZ_CP041097.1 See Comparison
OY856298.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP122912.1 See Comparison
NZ_OZ038592.1 See Comparison
NZ_OZ040493.1 See Comparison
CP057624.1 See Comparison
CP057414.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_CP055679.1 See Comparison
CP066199.1 See Comparison
NZ_LT985237.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_OP242316.1 See Comparison
CP063733.1 See Comparison
NZ_CP057102.1 See Comparison
NZ_CP087292.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_CP104543.1 See Comparison
NZ_CP080060.1 See Comparison
NZ_CP099724.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_OW968279.1 See Comparison
OW849254.1 See Comparison
OW849392.1 See Comparison
NZ_CP054981.1 See Comparison
OW849287.1 See Comparison
OW849281.1 See Comparison
NZ_CP097202.1 See Comparison
NZ_CP055117.1 See Comparison
CP090271.1 See Comparison
NZ_CP091536.1 See Comparison
NZ_MN868651.1 See Comparison
NZ_CP053653.1 See Comparison
NZ_CP087577.1 See Comparison
NZ_AP024129.1 See Comparison
NZ_CP016519.1 See Comparison
NZ_CP019025.1 See Comparison
NZ_CP010175.1 See Comparison
NZ_CP127253.1 See Comparison
NZ_CP041097.1 See Comparison
OY856298.1 See Comparison
NZ_CP127307.1 See Comparison
NZ_OZ038592.1 See Comparison
NZ_CP122912.1 See Comparison
NZ_OZ040493.1 See Comparison
CP057414.1 See Comparison
NZ_CP149310.1 See Comparison
NZ_CP141848.1 See Comparison
NZ_CP149315.1 See Comparison
NZ_AP027656.1 See Comparison
NZ_CP047581.1 See Comparison
NZ_CP055679.1 See Comparison
CP057624.1 See Comparison
NZ_LC438465.1 See Comparison
NZ_CP057102.1 See Comparison
CP066199.1 See Comparison
NZ_LT985237.1 See Comparison
CP063733.1 See Comparison
NZ_CP087292.1 See Comparison
NZ_CP103335.1 See Comparison
NZ_OP242316.1 See Comparison
NZ_CP116092.1 See Comparison
NZ_CP074037.1 See Comparison
NZ_CP074023.1 See Comparison
NZ_CP099724.1 See Comparison
NZ_OW968279.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore