Plasmid AP020331.1

Sequence

Nucleotide Information

Accession AP020331.1
Description Salmonella enterica SEHaa3795 plasmid pSEHaa3795_1 DNA, complete genome
Source insd
Topology circular
Length 4593 bp
GC Content 0.50 %
Created at NCBI April 14, 2020



Assembly

Genome Data Information

Accession GCA_012558165.1
Assembly Coverage 336


Biosample

Curated Collection Information
Accession 14593943

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Japan
Original Query Type name
Coordinates (Lat/Lon) 36.57/139.24
Address Japan

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON



Similar Plasmids

based on Mash distance

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NZ_CP149396.1 See Comparison
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CP057939.1 See Comparison
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NZ_CP043668.1 See Comparison
NZ_CP043666.1 See Comparison
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CP099157.1 See Comparison
CP099163.1 See Comparison
CP099196.1 See Comparison
CP098950.1 See Comparison
NZ_CP104545.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
OW968286.1 See Comparison
OW969874.1 See Comparison
NZ_CP100731.1 See Comparison
NZ_CP100714.1 See Comparison
NZ_CP092013.1 See Comparison
OW967766.1 See Comparison
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NZ_CP092005.1 See Comparison
NZ_CP090136.1 See Comparison
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Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore