Plasmid CP082510.1
Sequence
Nucleotide Information
| Accession | CP082510.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Muenchen strain FSIS1606504 plasmid pF18S006-4, complete sequence |
| Source | insd |
| Topology | circular |
| Length | 4593 bp |
| GC Content | 0.50 % |
| Created at NCBI | Sept. 2, 2021 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (596) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 4964189 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | USA,TN |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 35.77/-86.28 |
| Address | USA,TN |
ECOSYSTEM
| Original Query | animal-cattle-dairy cow |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | MbeB family mobilization protein | copy | ||
| PGAG | MbeD family mobilization/exclusion protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| PGAG | Rop family plasmid primer RNA-binding protein | copy | ||
| PGAG | MobC family plasmid mobilization relaxosome protein | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | rep_cluster_2350 | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 9 of 9 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_014003_00004 | MOBP | 3 | 1244 | plus | 100 | 99 | 0 | 774 |
| relaxase | CP043517_00004 | MOBP | 4239 | 4592 | plus | 80.508 | 93 | 7.65e-59 | 209 |
| replicon | CP035723_00002 | rep_cluster_2350 | 2942 | 3501 | minus | 93.761 | 100 | 0 | 839 |
| oriT | NZ_CP011065 | MOBP | 3511 | 3596 | plus | 100 | 100 | 3.03e-37 | 159 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 4 of 4 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |