Plasmid NZ_CP012684.1

Sequence

Nucleotide Information

Accession NZ_CP012684.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain 33676 plasmid p33676_4.5, complete sequence
Source refseq
Topology circular
Length 4512 bp
GC Content 0.50 %
Created at NCBI Sept. 22, 2015



Assembly

Genome Data Information

Accession GCF_001293505.1
Assembly Coverage 119


Biosample

Curated Collection Information
Accession 3795193

PLASMID INFORMATION
Genotype ST213

GEOGRAPHICAL INFORMATION
Original Query 19.43N;99.13W
Original Query Type coordinates
Coordinates (Lat/Lon) 19.43/-99.13
Address KFC, 70, Correo Mayor, Centro, Mexico City, Cuauhtémoc, Mexico City, 06060, Mexico

ECOSYSTEM
Original Query Homo sapiens; female,blood,blood-culture
Classification blood,cell_culture,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age fifteen years
Host-associated Sex female

DISEASE
Original Query Salmonellosis,recovered,febrile illness with invasive severe pancolitis
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.
  • Colitis (DOID:0060180 )
    • An inflammatory bowel disease that involves inflammation located_in colon.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP100731.1 See Comparison
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OW969874.1 See Comparison
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NZ_CP082093.1 See Comparison
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NZ_CP149393.1 See Comparison
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NZ_CP149390.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_AP027861.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP035550.1 See Comparison
CP099196.1 See Comparison
NZ_CP043668.1 See Comparison
NZ_CP043666.1 See Comparison
NZ_CP062856.1 See Comparison
CP048864.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
NZ_CP100731.1 See Comparison
NZ_CP104545.1 See Comparison
NZ_CP100714.1 See Comparison
OW969874.1 See Comparison
NZ_CP090144.1 See Comparison
OW967766.1 See Comparison
OW968286.1 See Comparison
NZ_CP092013.1 See Comparison
NZ_CP092005.1 See Comparison
CP082441.1 See Comparison
NZ_CP042591.1 See Comparison
CP082633.1 See Comparison
NZ_AP024120.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP030004.1 See Comparison
OX345627.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP149384.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
AP020331.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_AP027861.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP035550.1 See Comparison
CP057939.1 See Comparison
CP057629.1 See Comparison
NZ_CP104545.1 See Comparison
NZ_CP043668.1 See Comparison
NZ_CP043666.1 See Comparison
CP099196.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
NZ_CP062856.1 See Comparison
CP048864.1 See Comparison
NZ_CP100714.1 See Comparison
OW969874.1 See Comparison
NZ_CP100731.1 See Comparison
OW968286.1 See Comparison
OW967766.1 See Comparison
NZ_CP042591.1 See Comparison
NZ_CP092013.1 See Comparison
NZ_CP092005.1 See Comparison
NZ_CP090144.1 See Comparison
CP082441.1 See Comparison
CP082633.1 See Comparison
NZ_AP024120.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP149390.1 See Comparison
OX345627.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP030004.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP043668.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_CP149384.1 See Comparison
CP057939.1 See Comparison
CP057629.1 See Comparison
AP020331.1 See Comparison
NZ_AP027861.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP035550.1 See Comparison
NZ_CP043666.1 See Comparison
CP048864.1 See Comparison
NZ_CP062856.1 See Comparison
NZ_CP100731.1 See Comparison
CP099196.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
NZ_CP104545.1 See Comparison
NZ_CP100714.1 See Comparison
NZ_CP090144.1 See Comparison
OW969874.1 See Comparison
OW968286.1 See Comparison
NZ_CP092013.1 See Comparison
NZ_CP092005.1 See Comparison
OW967766.1 See Comparison
NZ_CP082093.1 See Comparison
CP082633.1 See Comparison
CP082441.1 See Comparison
NZ_AP024120.1 See Comparison
NZ_CP042591.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP030004.1 See Comparison
OX345627.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_CP149384.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP043668.1 See Comparison
CP057629.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP035550.1 See Comparison
NZ_AP027861.1 See Comparison
CP057939.1 See Comparison
AP020331.1 See Comparison
NZ_CP043666.1 See Comparison
NZ_CP100731.1 See Comparison
NZ_CP062856.1 See Comparison
CP099196.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
CP048864.1 See Comparison
NZ_CP104545.1 See Comparison
NZ_CP100714.1 See Comparison
NZ_CP092013.1 See Comparison
OW969874.1 See Comparison
OW968286.1 See Comparison
OW967766.1 See Comparison
NZ_CP092005.1 See Comparison
CP082633.1 See Comparison
NZ_CP090144.1 See Comparison
CP082441.1 See Comparison
NZ_AP024120.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_CP042591.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP030004.1 See Comparison
OX345627.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149384.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_AP027861.1 See Comparison
CP057629.1 See Comparison
CP057939.1 See Comparison
NZ_CP035550.1 See Comparison
CP048864.1 See Comparison
AP020331.1 See Comparison
NZ_CP043666.1 See Comparison
NZ_CP043668.1 See Comparison
NZ_CP062856.1 See Comparison
NZ_CP116131.1 See Comparison
CP099196.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP116140.1 See Comparison
OW968286.1 See Comparison
NZ_CP104545.1 See Comparison
NZ_CP100731.1 See Comparison
NZ_CP100714.1 See Comparison
OW969874.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_CP092013.1 See Comparison
NZ_CP092005.1 See Comparison
NZ_CP090144.1 See Comparison
CP082633.1 See Comparison
CP082441.1 See Comparison
NZ_AP024120.1 See Comparison
OW967766.1 See Comparison
NZ_CP012684.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP042591.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP030004.1 See Comparison
OX345627.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149384.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_AP027861.1 See Comparison
NZ_CP062856.1 See Comparison
AP020331.1 See Comparison
NZ_CP050733.1 See Comparison
CP057939.1 See Comparison
CP057629.1 See Comparison
NZ_CP035550.1 See Comparison
NZ_CP043668.1 See Comparison
NZ_CP043666.1 See Comparison
CP099196.1 See Comparison
CP048864.1 See Comparison
NZ_CP117608.1 See Comparison
NZ_CP092013.1 See Comparison
NZ_CP104545.1 See Comparison
NZ_CP100731.1 See Comparison
NZ_CP100714.1 See Comparison
OW969874.1 See Comparison
NZ_CP116131.1 See Comparison
NZ_CP116140.1 See Comparison
OW968286.1 See Comparison
OW967766.1 See Comparison
NZ_CP092005.1 See Comparison
NZ_CP090144.1 See Comparison
NZ_CP042591.1 See Comparison
CP082633.1 See Comparison
CP082441.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP010318.1 See Comparison
NZ_AP024120.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP149302.1 See Comparison
NZ_CP029993.1 See Comparison
NZ_CP030004.1 See Comparison
OX345627.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP124370.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP149390.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149402.1 See Comparison
NZ_CP149306.1 See Comparison
NZ_CP149316.1 See Comparison
NZ_CP149396.1 See Comparison
NZ_CP149387.1 See Comparison
NZ_CP149399.1 See Comparison
NZ_CP149393.1 See Comparison
NZ_CP149311.1 See Comparison
NZ_CP149384.1 See Comparison
CP057939.1 See Comparison
NZ_CP149405.1 See Comparison
NZ_AP027861.1 See Comparison
CP057629.1 See Comparison
AP020331.1 See Comparison
NZ_CP050733.1 See Comparison
NZ_CP043668.1 See Comparison
NZ_CP035550.1 See Comparison
NZ_CP043666.1 See Comparison
NZ_CP062856.1 See Comparison
CP048864.1 See Comparison
NZ_CP117608.1 See Comparison
CP099196.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2