Plasmid CP088361.1

Sequence

Nucleotide Information

Accession CP088361.1
Description Escherichia coli strain F17EC0098 plasmid pF17EC0098-5, complete sequence
Source insd
Topology circular
Length 4593 bp
GC Content 0.50 %
Created at NCBI Dec. 9, 2021



Assembly

Genome Data Information

Accession GCF_021130495.1
Assembly Coverage 133


Biosample

Curated Collection Information
Accession 23391703

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 35.18N;129.08E
Original Query Type coordinates
Coordinates (Lat/Lon) 35.18/129.08
Address 중앙천로73번길, Yeonsan 2(i)-dong, Yeonje-gu, Busan, 47599, South Korea

ECOSYSTEM
Original Query Homo sapiens,blood
Classification blood,circulatory_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Bloodstream infection
DOID/SYMP
  • Disease infectious agent (DOID:0050117 )
    • A disease that is the consequence of the presence of pathogenic microbial agents, including pathogenic viruses, pathogenic bacteria, fungi, protozoa, multicellular parasites, and aberrant proteins known as prions.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

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NZ_CP149405.1 See Comparison
NZ_CP149297.1 See Comparison
NZ_CP149396.1 See Comparison
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NZ_CP149390.1 See Comparison
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NZ_CP029993.1 See Comparison
NZ_CP030004.1 See Comparison
NZ_CP011433.1 See Comparison
NZ_CP042591.1 See Comparison
NZ_CP039570.1 See Comparison
NZ_CP039573.1 See Comparison
NZ_CP065133.1 See Comparison
NZ_CP133421.1 See Comparison
NZ_CP065130.1 See Comparison
NZ_CP107190.1 See Comparison
NZ_CP082079.1 See Comparison
NZ_CP082093.1 See Comparison
NZ_CP124370.1 See Comparison
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Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore