Plasmid NZ_CP103477.1

Sequence

Nucleotide Information

Accession	NZ_CP103477.1
Description	Escherichia coli strain 4973 plasmid pMB9698_9, complete sequence
Source	refseq
Topology	circular
Length	1549 bp
GC Content	0.51 %
Created at NCBI	Sept. 6, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_024918135.1
Assembly Coverage	250

Biosample

Curated Collection Information

Accession	28174076

PLASMID INFORMATION

Genotype	ST648

GEOGRAPHICAL INFORMATION

Original Query	29.7068N;95.3971W
Original Query Type	coordinates
Coordinates (Lat/Lon)	29.71/-95.40
Address	University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Bacteremia
DOID/SYMP	Bacterial infectious disease (DOID:104 ) A disease by infectious agent that results_in infection, has_material_basis_in Bacteria. Has_material_basis_in: ['bacteria']

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP030338.1	See Comparison
CP134904.1	See Comparison
NZ_CP128887.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP124428.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
CP125080.1	See Comparison
NZ_CP124391.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP030338.1	See Comparison
CP134904.1	See Comparison
NZ_CP128887.1	See Comparison
CP088709.1	See Comparison
NZ_CP015143.1	See Comparison
NZ_CP124428.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124391.1	See Comparison
CP125080.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP030338.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP060890.1	See Comparison
CP088709.1	See Comparison
NZ_CP015143.1	See Comparison
NZ_CP124397.1	See Comparison
CP134904.1	See Comparison
NZ_CP128887.1	See Comparison
NZ_CP124428.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124391.1	See Comparison
CP125080.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_LR890697.1	See Comparison
CP088709.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP030338.1	See Comparison
NZ_CP124428.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP015143.1	See Comparison
CP134904.1	See Comparison
NZ_CP128887.1	See Comparison
CP125080.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP124391.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
NZ_CP030338.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP015143.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP074493.1	See Comparison
CP088709.1	See Comparison
CP134904.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP128887.1	See Comparison
NZ_CP124428.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP124391.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
NZ_CP124397.1	See Comparison
CP125080.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP015143.1	See Comparison
CP088709.1	See Comparison
NZ_CP128887.1	See Comparison
NZ_CP030338.1	See Comparison
CP134904.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_CP124397.1	See Comparison
CP125080.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP124428.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP124391.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP103737.1	See Comparison
CP088709.1	See Comparison
NZ_CP015143.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore