Plasmid NZ_LR890697.1

Sequence

Nucleotide Information

Accession NZ_LR890697.1
Description Escherichia coli strain MSB1_4E isolate MSB1_4E plasmid 5, complete sequence
Source refseq
Topology circular
Length 1549 bp
GC Content 0.51 %
Created at NCBI Oct. 30, 2020



Assembly

Genome Data Information

Accession GCF_904866455.1
Assembly Coverage 154


Biosample

Curated Collection Information
Accession 4089335

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query Australia
Original Query Type name
Coordinates (Lat/Lon) -24.78/134.76
Address Australia

ECOSYSTEM
Original Query Homo sapiens,rectal swab
Classification gastrointestinal_system,host_associated,rectal
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query healthy
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP015143.1 See Comparison
NZ_CP030338.1 See Comparison
CP134904.1 See Comparison
NZ_CP128887.1 See Comparison
NZ_CP124397.1 See Comparison
NZ_CP124428.1 See Comparison
NZ_CP124447.1 See Comparison
NZ_CP124519.1 See Comparison
NZ_CP124435.1 See Comparison
NZ_CP124419.1 See Comparison
NZ_CP124441.1 See Comparison
NZ_CP124423.1 See Comparison
CP125080.1 See Comparison
NZ_CP124391.1 See Comparison
NZ_CP107233.1 See Comparison
AP029166.1 See Comparison
CP056580.1 See Comparison
NZ_CP053285.1 See Comparison
NZ_CP069494.1 See Comparison
NZ_CP074493.1 See Comparison
NZ_CP051614.1 See Comparison
NZ_CP051620.1 See Comparison
NZ_CP060890.1 See Comparison
NZ_CP103737.1 See Comparison
NZ_CP103477.1 See Comparison
NZ_CP015143.1 See Comparison
CP088709.1 See Comparison
CP134904.1 See Comparison
NZ_CP030338.1 See Comparison
NZ_CP128887.1 See Comparison
NZ_CP124519.1 See Comparison
NZ_CP124397.1 See Comparison
NZ_CP124435.1 See Comparison
NZ_CP124419.1 See Comparison
NZ_CP124441.1 See Comparison
NZ_CP124428.1 See Comparison
NZ_CP124423.1 See Comparison
NZ_CP124447.1 See Comparison
NZ_CP051614.1 See Comparison
NZ_CP124391.1 See Comparison
NZ_CP107233.1 See Comparison
AP029166.1 See Comparison
CP056580.1 See Comparison
NZ_CP069494.1 See Comparison
CP125080.1 See Comparison
NZ_CP053285.1 See Comparison
NZ_CP051620.1 See Comparison
NZ_CP074493.1 See Comparison
NZ_CP015143.1 See Comparison
CP088709.1 See Comparison
NZ_CP103737.1 See Comparison
NZ_CP103477.1 See Comparison
NZ_CP060890.1 See Comparison
CP134904.1 See Comparison
NZ_CP030338.1 See Comparison
CP125080.1 See Comparison
NZ_CP124397.1 See Comparison
NZ_CP124428.1 See Comparison
NZ_CP124447.1 See Comparison
NZ_CP124519.1 See Comparison
NZ_CP124435.1 See Comparison
NZ_CP128887.1 See Comparison
NZ_CP124419.1 See Comparison
NZ_CP124441.1 See Comparison
NZ_CP124423.1 See Comparison
NZ_CP053285.1 See Comparison
NZ_CP124391.1 See Comparison
NZ_CP107233.1 See Comparison
AP029166.1 See Comparison
CP056580.1 See Comparison
NZ_CP069494.1 See Comparison
NZ_CP051614.1 See Comparison
NZ_CP051620.1 See Comparison
NZ_CP074493.1 See Comparison
CP088709.1 See Comparison
NZ_CP103737.1 See Comparison
NZ_CP103477.1 See Comparison
NZ_CP060890.1 See Comparison
NZ_CP124397.1 See Comparison
NZ_CP015143.1 See Comparison
CP134904.1 See Comparison
NZ_CP128887.1 See Comparison
NZ_CP030338.1 See Comparison
NZ_CP124428.1 See Comparison
NZ_CP124419.1 See Comparison
NZ_CP124441.1 See Comparison
NZ_CP124423.1 See Comparison
NZ_CP124447.1 See Comparison
NZ_CP124519.1 See Comparison
NZ_CP124435.1 See Comparison
NZ_CP124391.1 See Comparison
CP125080.1 See Comparison
NZ_CP107233.1 See Comparison
AP029166.1 See Comparison
CP056580.1 See Comparison
NZ_CP053285.1 See Comparison
NZ_CP103737.1 See Comparison
NZ_CP069494.1 See Comparison
NZ_CP051614.1 See Comparison
NZ_CP051620.1 See Comparison
NZ_CP074493.1 See Comparison
NZ_CP103477.1 See Comparison
CP088709.1 See Comparison
NZ_CP060890.1 See Comparison
CP125080.1 See Comparison
NZ_CP015143.1 See Comparison
NZ_CP030338.1 See Comparison
NZ_CP124397.1 See Comparison
NZ_CP124428.1 See Comparison
NZ_CP124447.1 See Comparison
NZ_CP124519.1 See Comparison
NZ_CP124435.1 See Comparison
NZ_CP124419.1 See Comparison
NZ_CP124441.1 See Comparison
CP134904.1 See Comparison
NZ_CP128887.1 See Comparison
NZ_CP124423.1 See Comparison
NZ_CP107233.1 See Comparison
NZ_CP124391.1 See Comparison
AP029166.1 See Comparison
CP056580.1 See Comparison
NZ_CP103737.1 See Comparison
NZ_CP053285.1 See Comparison
NZ_CP069494.1 See Comparison
NZ_CP051614.1 See Comparison
NZ_CP051620.1 See Comparison
NZ_CP074493.1 See Comparison
NZ_CP103477.1 See Comparison
NZ_CP060890.1 See Comparison
NZ_CP128887.1 See Comparison
CP088709.1 See Comparison
CP134904.1 See Comparison
NZ_CP015143.1 See Comparison
NZ_CP030338.1 See Comparison
NZ_CP124428.1 See Comparison
NZ_CP124447.1 See Comparison
NZ_CP124519.1 See Comparison
NZ_CP124397.1 See Comparison
NZ_CP124435.1 See Comparison
NZ_CP124419.1 See Comparison
NZ_CP124441.1 See Comparison
NZ_CP124423.1 See Comparison
NZ_CP124391.1 See Comparison
NZ_CP107233.1 See Comparison
CP125080.1 See Comparison
NZ_LR890697.1 See Comparison
AP029166.1 See Comparison
NZ_CP053285.1 See Comparison
CP056580.1 See Comparison
NZ_CP069494.1 See Comparison
NZ_CP074493.1 See Comparison
NZ_CP051614.1 See Comparison
NZ_CP051620.1 See Comparison
NZ_CP128887.1 See Comparison
NZ_CP103737.1 See Comparison
NZ_CP103477.1 See Comparison
NZ_CP060890.1 See Comparison
NZ_CP015143.1 See Comparison
CP134904.1 See Comparison
CP088709.1 See Comparison
NZ_CP030338.1 See Comparison
CP125080.1 See Comparison
NZ_CP124397.1 See Comparison
NZ_CP124428.1 See Comparison
NZ_CP124447.1 See Comparison
NZ_CP124519.1 See Comparison
NZ_CP124435.1 See Comparison
NZ_CP124419.1 See Comparison
NZ_CP124441.1 See Comparison
NZ_CP124423.1 See Comparison
NZ_CP124391.1 See Comparison
NZ_CP107233.1 See Comparison
AP029166.1 See Comparison
NZ_CP051614.1 See Comparison
CP056580.1 See Comparison
NZ_CP053285.1 See Comparison
NZ_CP069494.1 See Comparison
NZ_CP051620.1 See Comparison
NZ_CP103477.1 See Comparison
NZ_CP060890.1 See Comparison
NZ_CP074493.1 See Comparison
NZ_CP103737.1 See Comparison
CP088709.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2