Plasmid NZ_CP124428.1

Sequence

Nucleotide Information

Accession	NZ_CP124428.1
Description	Escherichia coli strain AVS0247 plasmid pAVS0247-D, complete sequence
Source	refseq
Topology	circular
Length	1549 bp
GC Content	0.51 %
Created at NCBI	May 21, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_030039075.1
Assembly Coverage	None

Biosample

Curated Collection Information

Accession	34360972

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Switzerland,Kanton Zug
Original Query Type	name
Coordinates (Lat/Lon)	47.15/8.55
Address	Switzerland,Kanton Zug

ECOSYSTEM

Original Query	environmental: river/lake
Classification	aquatic,freshwater,river
Host-associated Taxon

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

CP134904.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP124428.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
CP125080.1	See Comparison
NZ_CP124391.1	See Comparison
NZ_CP148356.1	See Comparison
NZ_CP107233.1	See Comparison
CP056580.1	See Comparison
AP029166.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP124397.1	See Comparison
CP088709.1	See Comparison
NZ_CP076691.1	See Comparison
NZ_CP015143.1	See Comparison
NZ_CP030338.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP076311.1	See Comparison
CP134904.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP107233.1	See Comparison
CP056580.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
CP125080.1	See Comparison
NZ_CP124391.1	See Comparison
NZ_CP148356.1	See Comparison
AP029166.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP103477.1	See Comparison
CP134904.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP060890.1	See Comparison
CP088709.1	See Comparison
NZ_CP076691.1	See Comparison
NZ_CP015143.1	See Comparison
NZ_CP030338.1	See Comparison
NZ_CP076311.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP124391.1	See Comparison
NZ_CP148356.1	See Comparison
CP056580.1	See Comparison
CP125080.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
CP088709.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP076691.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP076311.1	See Comparison
NZ_CP015143.1	See Comparison
CP134904.1	See Comparison
NZ_CP030338.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP148356.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124391.1	See Comparison
CP125080.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_CP076691.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP060890.1	See Comparison
CP088709.1	See Comparison
NZ_CP076311.1	See Comparison
NZ_CP015143.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP030338.1	See Comparison
CP134904.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP124391.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
CP125080.1	See Comparison
NZ_CP148356.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP076691.1	See Comparison
NZ_CP030338.1	See Comparison
CP134904.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
CP125080.1	See Comparison
NZ_CP148356.1	See Comparison
AP029166.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP060890.1	See Comparison
CP088709.1	See Comparison
NZ_CP076311.1	See Comparison
NZ_CP015143.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP124391.1	See Comparison
NZ_CP107233.1	See Comparison
CP056580.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP076311.1	See Comparison
CP088709.1	See Comparison
NZ_CP015143.1	See Comparison
NZ_CP076691.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP030338.1	See Comparison
CP134904.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP053285.1	See Comparison
NZ_CP124447.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124441.1	See Comparison
NZ_CP124391.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
CP125080.1	See Comparison
NZ_CP148356.1	See Comparison
NZ_CP076311.1	See Comparison
NZ_CP069494.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP103477.1	See Comparison
CP088709.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP076691.1	See Comparison
NZ_CP015143.1	See Comparison
NZ_CP030338.1	See Comparison

Identical Plasmids

100% Sequence Identity

NZ_CP124447.1

Sequence

Accession: NZ_CP124447.1
Description: Escherichia coli strain AVS0196 plasmid pAVS0196-E, complete sequence
Source: refseq
Created at NCBI: May 21, 2023

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 34360969

GEOGRAPHICAL INFORMATION

Original Query: Switzerland,Kanton Zug
Original Query Type: name
Address: Switzerland,Kanton Zug
Coordinates (Lat/Lon): 47.15/8.55

ECOSYSTEM

Original Query: environmental: river near WWTP effluent
Classification: aquatic,freshwater,river
Host-associated Taxon:

Visualization

NZ_CP124441.1

Sequence

Accession: NZ_CP124441.1
Description: Escherichia coli strain AVS0790 plasmid pAVS0790-E, complete sequence
Source: refseq
Created at NCBI: May 21, 2023

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 34360970

GEOGRAPHICAL INFORMATION

Original Query: Switzerland,Kanton Zug
Original Query Type: name
Address: Switzerland,Kanton Zug
Coordinates (Lat/Lon): 47.15/8.55

ECOSYSTEM

Original Query: wastewater efflux
Classification: wastewater
Host-associated Taxon:

Visualization

NZ_CP124391.1

Sequence

Accession: NZ_CP124391.1
Description: Escherichia coli strain AVS0972 plasmid pAVS0972-D, complete sequence
Source: refseq
Created at NCBI: May 14, 2023

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 34360981

GEOGRAPHICAL INFORMATION

Original Query: Switzerland,Kanton Zug
Original Query Type: name
Address: Switzerland,Kanton Zug
Coordinates (Lat/Lon): 47.15/8.55

ECOSYSTEM

Original Query: wastewater
Classification: wastewater
Host-associated Taxon:

Visualization

NZ_CP053285.1

Sequence

Accession: NZ_CP053285.1
Description: Escherichia coli strain SCU-104 plasmid pSCU-104-1
Source: refseq
Created at NCBI: June 12, 2020

Host Taxonomy

Assigned Host: Escherichia coli (562)

Superkingdom : Bacteria (2)
Phylum : Pseudomonadota (1224)
Class : Gammaproteobacteria (1236)
Order : Enterobacterales (91347)
Family : Enterobacteriaceae (543)
Genus : Escherichia (561)
Species : Escherichia_coli (562)
Strain:

Biosample

Accession: 14609769

GEOGRAPHICAL INFORMATION

Original Query: USA,California
Original Query Type: name
Address: USA,California
Coordinates (Lat/Lon): 36.70/-118.76

ECOSYSTEM

Original Query: Homo sapiens,whole organism,rectal swab from healthy college student
Classification: gastrointestinal_system,host_associated,rectal
Host-associated Taxon:
- Homo sapiens (9606)

Visualization

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore

Detected typing markers by plasmidfinder

NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2
NUCCORE ACC	Typing	Identity	Coverage	Start	End	Strand	HSP length	Template length	Position in ref	Positions in Contig	Note	Accession	Hit id	Organism L1	Organism L2