Plasmid NZ_CP128887.1

Sequence

Nucleotide Information

Accession	NZ_CP128887.1
Description	Escherichia coli strain TUM14759 plasmid pMTY14759_Col, complete sequence
Source	refseq
Topology	circular
Length	1549 bp
GC Content	0.51 %
Created at NCBI	July 7, 2023

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_030389215.1
Assembly Coverage	61

Biosample

Curated Collection Information

Accession	35654571

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION

Original Query	Japan
Original Query Type	name
Coordinates (Lat/Lon)	36.57/139.24
Address	Japan

ECOSYSTEM

Original Query	Homo sapiens,feces
Classification	fecal,gastrointestinal_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	None
DOID/SYMP

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_LR890697.1	See Comparison
NZ_CP060064.1	See Comparison
NZ_CP060060.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP099343.1	See Comparison
CP098967.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP076311.1	See Comparison
NC_017650.1	See Comparison
CP134904.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_OZ040557.1	See Comparison
CP125080.1	See Comparison
NZ_OZ038537.1	See Comparison
NZ_CP148356.1	See Comparison
NZ_AP027587.1	See Comparison
NZ_CP107233.1	See Comparison
NZ_CP124397.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
NZ_CP060064.1	See Comparison
NZ_CP060060.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP099343.1	See Comparison
CP098967.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP076311.1	See Comparison
NC_017650.1	See Comparison
NZ_CP069466.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP060890.1	See Comparison
CP134904.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_OZ040557.1	See Comparison
CP125080.1	See Comparison
NZ_OZ038537.1	See Comparison
NZ_CP148356.1	See Comparison
NZ_AP027587.1	See Comparison
NZ_CP107233.1	See Comparison
NZ_CP060064.1	See Comparison
AP029166.1	See Comparison
CP056580.1	See Comparison
NZ_CP069466.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP060060.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP099343.1	See Comparison
CP098967.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP128887.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP076311.1	See Comparison
NC_017650.1	See Comparison
CP134904.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_OZ038537.1	See Comparison
CP125080.1	See Comparison
NZ_CP148356.1	See Comparison
NZ_OZ040557.1	See Comparison
NZ_CP107233.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_AP027587.1	See Comparison
CP056580.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP060064.1	See Comparison
NZ_CP060060.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
NZ_CP099343.1	See Comparison
CP098967.1	See Comparison
AP029166.1	See Comparison
NZ_CP069466.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP076311.1	See Comparison
CP134904.1	See Comparison
NC_017650.1	See Comparison
NZ_CP124397.1	See Comparison
CP125080.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP060064.1	See Comparison
NZ_OZ040557.1	See Comparison
NZ_OZ038537.1	See Comparison
NZ_CP148356.1	See Comparison
NZ_CP107233.1	See Comparison
NZ_AP027587.1	See Comparison
CP056580.1	See Comparison
NZ_LR890697.1	See Comparison
AP029166.1	See Comparison
NZ_CP069466.1	See Comparison
NZ_CP060060.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
CP125080.1	See Comparison
NZ_CP099343.1	See Comparison
CP098967.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP060890.1	See Comparison
NZ_CP076311.1	See Comparison
NZ_CP124397.1	See Comparison
NZ_CP103477.1	See Comparison
NC_017650.1	See Comparison
CP134904.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_AP027587.1	See Comparison
NZ_OZ040557.1	See Comparison
NZ_OZ038537.1	See Comparison
NZ_CP148356.1	See Comparison
NZ_CP060064.1	See Comparison
NZ_CP107233.1	See Comparison
AP029166.1	See Comparison
NZ_CP069466.1	See Comparison
CP056580.1	See Comparison
NZ_LR890697.1	See Comparison
NZ_CP060060.1	See Comparison
NZ_CP051614.1	See Comparison
NZ_CP051620.1	See Comparison
CP098967.1	See Comparison
NZ_CP074493.1	See Comparison
NZ_CP099343.1	See Comparison
NZ_CP103737.1	See Comparison
NZ_CP103477.1	See Comparison
NZ_CP076311.1	See Comparison
NZ_CP060890.1	See Comparison
CP134904.1	See Comparison
NC_017650.1	See Comparison
NZ_CP124519.1	See Comparison
NZ_CP124435.1	See Comparison
NZ_CP124419.1	See Comparison
NZ_CP124423.1	See Comparison
NZ_CP124397.1	See Comparison
AP029166.1	See Comparison
NZ_OZ040557.1	See Comparison
NZ_OZ038537.1	See Comparison
NZ_CP148356.1	See Comparison
NZ_CP107233.1	See Comparison
NZ_AP027587.1	See Comparison
CP125080.1	See Comparison
CP056580.1	See Comparison
NZ_CP069466.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore