Plasmid NZ_CP124447.1
Sequence
Nucleotide Information
| Accession | NZ_CP124447.1 |
|---|---|
| Description | Escherichia coli strain AVS0196 plasmid pAVS0196-E, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 1549 bp |
| GC Content | 0.51 % |
| Created at NCBI | May 21, 2023 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Escherichia coli (562) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Escherichia (561) |
| Species | Escherichia_coli (562) |
| Strain |
Biosample
Curated Collection Information
| Accession | 34360969 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Switzerland,Kanton Zug |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 47.15/8.55 |
| Address | Switzerland,Kanton Zug |
ECOSYSTEM
| Original Query | environmental: river near WWTP effluent |
|---|---|
| Classification | aquatic,freshwater,river |
| Host-associated Taxon |
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| PGAG | helix-turn-helix domain-containing protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | MOBP | copy | ||
| MOB-typer | MOB_unknown | copy | ||
| MOB-typer | Col(MG828) | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 5 of 5 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | NC_008486 | Col(MG828) | 708 | 969 | minus | 91.985 | 100 | 1.85e-99 | 368 |
| oriT | CP001386 | MOBP | 1068 | 1167 | plus | 100 | 100 | 6.22e-45 | 185 |
| oriT | GQ900404 | MOB_unknown | 1362 | 1471 | minus | 98.182 | 100 | 4.23e-47 | 193 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 3 of 3 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |