Plasmid NZ_CP103474.1

Sequence

Nucleotide Information

Accession	NZ_CP103474.1
Description	Escherichia coli strain 4973 plasmid pMB9698_6, complete sequence
Source	refseq
Topology	circular
Length	2699 bp
GC Content	0.50 %
Created at NCBI	Sept. 6, 2022

Host Taxonomy

According to NCBI Taxonomy

Assigned Host	Escherichia coli (562)

Lineage

Superkingdom	Bacteria (2)
Phylum	Pseudomonadota (1224)
Class	Gammaproteobacteria (1236)
Order	Enterobacterales (91347)
Family	Enterobacteriaceae (543)
Genus	Escherichia (561)
Species	Escherichia_coli (562)
Strain

Assembly

Genome Data Information

Accession	GCF_024918135.1
Assembly Coverage	250

Biosample

Curated Collection Information

Accession	28174076

PLASMID INFORMATION

Genotype	ST648

GEOGRAPHICAL INFORMATION

Original Query	29.7068N;95.3971W
Original Query Type	coordinates
Coordinates (Lat/Lon)	29.71/-95.40
Address	University of Texas MD Anderson Cancer Center, 1515, Holcombe Boulevard, Texas Medical Center, Houston, Harris County, Texas, 77030, United States

ECOSYSTEM

Original Query	Homo sapiens,blood
Classification	blood,circulatory_system,host_associated
Host-associated Taxon	Homo sapiens (9606)

DISEASE

Original Query	Bacteremia
DOID/SYMP	Bacterial infectious disease (DOID:104 ) A disease by infectious agent that results_in infection, has_material_basis_in Bacteria. Has_material_basis_in: ['bacteria']

Visualization

Plasmids from same Biosample

Similar Plasmids

based on Mash distance

NZ_CP103575.1	See Comparison
OW849385.1	See Comparison
NZ_CP084003.1	See Comparison
NZ_CP081523.1	See Comparison
NZ_CP081672.1	See Comparison
NZ_CP081520.1	See Comparison
NZ_CP081670.1	See Comparison
NZ_CP081521.1	See Comparison
CP082455.1	See Comparison
NC_019101.1	See Comparison
NC_019086.1	See Comparison
NC_012916.1	See Comparison
NZ_CP039609.1	See Comparison
NZ_CP035388.1	See Comparison
NZ_CP030230.1	See Comparison
MF554640.1	See Comparison
NZ_CP030230.1	See Comparison
CP123697.1	See Comparison
NZ_AP027703.1	See Comparison
NZ_AP027647.1	See Comparison
NZ_AP027541.1	See Comparison
NZ_AP027672.1	See Comparison
NZ_KY991368.1	See Comparison
NZ_HM070379.1	See Comparison
CP063728.1	See Comparison
NZ_CP117335.1	See Comparison
NZ_CP117331.1	See Comparison
NZ_CP103474.1	See Comparison
NZ_CP103575.1	See Comparison
NZ_CP081523.1	See Comparison
NZ_CP081672.1	See Comparison
NZ_CP081520.1	See Comparison
NZ_CP081670.1	See Comparison
NZ_CP081521.1	See Comparison
CP082455.1	See Comparison
NZ_OP038297.1	See Comparison
OW849385.1	See Comparison
NZ_CP084003.1	See Comparison
NC_019101.1	See Comparison
NC_019086.1	See Comparison
NC_012916.1	See Comparison
NZ_CP039609.1	See Comparison
MF554640.1	See Comparison
CP123697.1	See Comparison
NZ_CP035388.1	See Comparison
NZ_AP027647.1	See Comparison
NZ_AP027541.1	See Comparison
NZ_AP027672.1	See Comparison
NZ_HM070379.1	See Comparison
NZ_AP027703.1	See Comparison
NZ_KY991368.1	See Comparison
CP063728.1	See Comparison
NZ_OP038297.1	See Comparison
NZ_CP117335.1	See Comparison
NZ_CP117331.1	See Comparison
NZ_CP103575.1	See Comparison
OW849385.1	See Comparison
CP082455.1	See Comparison
NZ_CP084003.1	See Comparison
NZ_CP081523.1	See Comparison
NZ_CP081672.1	See Comparison
NZ_CP081520.1	See Comparison
NZ_CP081670.1	See Comparison
NZ_CP081521.1	See Comparison
NC_012916.1	See Comparison
NC_019101.1	See Comparison
NC_019086.1	See Comparison
NZ_CP039609.1	See Comparison
NZ_CP035388.1	See Comparison
NZ_CP030230.1	See Comparison
MF554640.1	See Comparison
NZ_AP027703.1	See Comparison
CP123697.1	See Comparison
NZ_AP027647.1	See Comparison
NZ_CP084003.1	See Comparison
NZ_AP027541.1	See Comparison
NZ_AP027672.1	See Comparison
NZ_KY991368.1	See Comparison
NZ_HM070379.1	See Comparison
CP063728.1	See Comparison
NZ_CP117335.1	See Comparison
NZ_CP117331.1	See Comparison
NZ_CP103575.1	See Comparison
NZ_OP038297.1	See Comparison
OW849385.1	See Comparison
NC_019101.1	See Comparison
NZ_CP081523.1	See Comparison
NZ_CP081672.1	See Comparison
NZ_CP081520.1	See Comparison
NZ_CP081670.1	See Comparison
NZ_CP081521.1	See Comparison
CP082455.1	See Comparison
NC_019086.1	See Comparison
CP123697.1	See Comparison
NC_012916.1	See Comparison
NZ_CP039609.1	See Comparison
NZ_CP035388.1	See Comparison
NZ_CP030230.1	See Comparison
MF554640.1	See Comparison
NZ_AP027647.1	See Comparison
NZ_AP027703.1	See Comparison
NZ_AP027541.1	See Comparison
NZ_AP027672.1	See Comparison
NZ_KY991368.1	See Comparison
CP063728.1	See Comparison
NZ_HM070379.1	See Comparison
OW849385.1	See Comparison
NZ_CP103575.1	See Comparison
NZ_CP117335.1	See Comparison
NZ_CP117331.1	See Comparison
NZ_OP038297.1	See Comparison
NZ_CP081523.1	See Comparison
NZ_CP084003.1	See Comparison
NZ_CP081672.1	See Comparison
NZ_CP081520.1	See Comparison
NZ_CP081670.1	See Comparison
NZ_CP081521.1	See Comparison
NC_012916.1	See Comparison
CP082455.1	See Comparison
NC_019101.1	See Comparison
NC_019086.1	See Comparison
NZ_AP027647.1	See Comparison
NZ_CP039609.1	See Comparison
NZ_CP035388.1	See Comparison
NZ_CP030230.1	See Comparison
MF554640.1	See Comparison
CP123697.1	See Comparison
NZ_AP027703.1	See Comparison
NZ_AP027541.1	See Comparison
NZ_AP027672.1	See Comparison
NZ_CP103575.1	See Comparison
NZ_KY991368.1	See Comparison
NZ_HM070379.1	See Comparison
CP063728.1	See Comparison
NZ_CP117335.1	See Comparison
NZ_CP117331.1	See Comparison
NZ_OP038297.1	See Comparison
NZ_CP084003.1	See Comparison
NZ_CP081523.1	See Comparison
OW849385.1	See Comparison
CP082455.1	See Comparison
NZ_CP081672.1	See Comparison
NZ_CP081520.1	See Comparison
NZ_CP081670.1	See Comparison
NZ_CP081521.1	See Comparison
NZ_AP027647.1	See Comparison
NC_019101.1	See Comparison
NC_012916.1	See Comparison
NZ_CP039609.1	See Comparison
NZ_CP035388.1	See Comparison
NZ_CP030230.1	See Comparison
MF554640.1	See Comparison
NC_019086.1	See Comparison
CP123697.1	See Comparison
NZ_AP027703.1	See Comparison
NZ_AP027541.1	See Comparison
NZ_AP027672.1	See Comparison
NZ_CP117335.1	See Comparison
NZ_KY991368.1	See Comparison
NZ_HM070379.1	See Comparison
CP063728.1	See Comparison
NZ_CP117331.1	See Comparison
NZ_OP038297.1	See Comparison

Plasmid Visualization

NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite
NUCCORE ACC	Source	Element Name	Display	Sequence	Favorite

Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process
NUCCORE ACC	Gene	Locus Tag	Product	Protein id	Codon Start	Translation Table	GO process

Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)
NUCCORE ACC	Analysis Software Name	Reference Database Version	Gene Symbol	Gene Name	Drug Class	Antimicrobial Agent	Gene Start	Gene Stop	Gene Length	Strand Orientation	Sequence Identity (%)	Coverage (%)

Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)

NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)
NUCCORE ACC	Contigs	md5 hash	Replicon Type	Relaxase Type	MPF Type	OriT Type	Predicted Mobility	Primary Cluster ID	Secondary Cluster ID	Observed Host Range Ncbi Rank	Observed Host Range Ncbi Name	Mash Nearest Neighbor	Mash Neighbor Distance	Mash Neighbor Identification	Reported Host Range Lit Rank	Reported Host Range Lit Name	Replicon Type Accession	Relaxase Type Accession	MPF Type Accession	OriT Type Accession	Associated PMID(s)

BLAST results of detected typing markers by MOB-type

NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore
NUCCORE ACC	biomarker	MOB-suite ID	Element	Start	End	Strand	Identity	Coverage	Evalue	Bitscore