Plasmid CP123697.1

Sequence

Nucleotide Information

Accession CP123697.1
Description Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain FSIS11809860 plasmid pFSIS11809860-5, complete sequence
Source insd
Topology circular
Length 2699 bp
GC Content 0.50 %
Created at NCBI April 20, 2023



Assembly

Genome Data Information

Accession GCA_008445505.2
Assembly Coverage 294


Biosample

Curated Collection Information
Accession 9372566

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query USA,VA
Original Query Type name
Coordinates (Lat/Lon) 37.12/-78.49
Address USA,VA

ECOSYSTEM
Original Query animal-swine-market swine
Classification host_associated
Host-associated Taxon

DISEASE
Original Query None
DOID/SYMP

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP081523.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
CP082455.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
NC_012916.1 See Comparison
NZ_CP039609.1 See Comparison
NZ_CP030230.1 See Comparison
NZ_CP035388.1 See Comparison
MF554640.1 See Comparison
NZ_CP117335.1 See Comparison
CP123697.1 See Comparison
NZ_AP027703.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
NZ_KY991368.1 See Comparison
NZ_HM070379.1 See Comparison
CP063728.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_CP103575.1 See Comparison
NZ_OP038297.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP084003.1 See Comparison
OW849385.1 See Comparison
CP082455.1 See Comparison
NZ_CP081523.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
NC_012916.1 See Comparison
NZ_CP030230.1 See Comparison
NZ_CP039609.1 See Comparison
NZ_CP035388.1 See Comparison
MF554640.1 See Comparison
NZ_HM070379.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
NZ_KY991368.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
NZ_AP027703.1 See Comparison
CP063728.1 See Comparison
CP063728.1 See Comparison
NZ_CP117335.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP103575.1 See Comparison
NZ_CP084003.1 See Comparison
NZ_CP081523.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
CP082455.1 See Comparison
NZ_CP030230.1 See Comparison
NZ_AP027703.1 See Comparison
NZ_OP038297.1 See Comparison
OW849385.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
NC_012916.1 See Comparison
NZ_CP039609.1 See Comparison
NZ_CP035388.1 See Comparison
MF554640.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
NZ_KY991368.1 See Comparison
NZ_HM070379.1 See Comparison
NZ_CP084003.1 See Comparison
OW849385.1 See Comparison
NZ_CP117335.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_OP038297.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP103575.1 See Comparison
NZ_CP081523.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
CP082455.1 See Comparison
NZ_OP038297.1 See Comparison
NC_012916.1 See Comparison
NZ_CP039609.1 See Comparison
NZ_CP035388.1 See Comparison
NZ_CP030230.1 See Comparison
MF554640.1 See Comparison
NZ_HM070379.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
NZ_AP027703.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
NZ_KY991368.1 See Comparison
CP063728.1 See Comparison
NZ_CP117335.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_CP035388.1 See Comparison
OW849385.1 See Comparison
NZ_CP084003.1 See Comparison
NZ_CP081523.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
CP082455.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
NZ_CP039609.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP103575.1 See Comparison
NC_012916.1 See Comparison
NZ_CP030230.1 See Comparison
CP063728.1 See Comparison
MF554640.1 See Comparison
NZ_AP027703.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
NZ_KY991368.1 See Comparison
NZ_HM070379.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP117335.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_OP038297.1 See Comparison
NZ_CP103575.1 See Comparison
NZ_CP084003.1 See Comparison
OW849385.1 See Comparison
CP082455.1 See Comparison
NZ_CP081523.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
NZ_CP030230.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
NC_012916.1 See Comparison
NZ_CP039609.1 See Comparison
NZ_CP035388.1 See Comparison
NZ_KY991368.1 See Comparison
MF554640.1 See Comparison
NZ_AP027703.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
CP063728.1 See Comparison
NZ_HM070379.1 See Comparison
NZ_CP103575.1 See Comparison
NZ_CP117335.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_OP038297.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP084003.1 See Comparison
OW849385.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore