Plasmid MF554640.1

Sequence

Nucleotide Information

Accession MF554640.1
Description uncultured bacterium clone AA-103 plasmid pPICR, complete sequence
Source insd
Topology circular
Length 2826 bp
GC Content 0.51 %
Created at NCBI Dec. 20, 2017


Host Taxonomy

According to NCBI Taxonomy

Assigned Host uncultured bacterium (77133)
Lineage
Superkingdom Bacteria (2)
Phylum
Class
Order
Family
Genus
Species uncultured_bacterium (77133)
Strain




Similar Plasmids

based on Mash distance

CP063728.1 See Comparison
NZ_CP117335.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_OP038297.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP103575.1 See Comparison
NZ_CP084003.1 See Comparison
OW849385.1 See Comparison
NC_012916.1 See Comparison
NZ_CP081523.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
CP082455.1 See Comparison
NZ_CP039609.1 See Comparison
NZ_CP035388.1 See Comparison
MF554640.1 See Comparison
NZ_CP030230.1 See Comparison
NZ_AP027703.1 See Comparison
CP123697.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
NZ_CP117335.1 See Comparison
NZ_HM070379.1 See Comparison
NZ_KY991368.1 See Comparison
CP063728.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_OP038297.1 See Comparison
NZ_CP081523.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP103575.1 See Comparison
NZ_CP084003.1 See Comparison
OW849385.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
NZ_CP039609.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
CP082455.1 See Comparison
NC_012916.1 See Comparison
NZ_CP035388.1 See Comparison
NZ_CP030230.1 See Comparison
NZ_AP027703.1 See Comparison
CP123697.1 See Comparison
NC_019101.1 See Comparison
NZ_KY991368.1 See Comparison
NZ_HM070379.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP103575.1 See Comparison
OW849385.1 See Comparison
NZ_CP081523.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
CP063728.1 See Comparison
NZ_CP117335.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_OP038297.1 See Comparison
NZ_CP084003.1 See Comparison
CP082455.1 See Comparison
NC_019086.1 See Comparison
NC_012916.1 See Comparison
NZ_CP030230.1 See Comparison
NZ_CP035388.1 See Comparison
NZ_CP039609.1 See Comparison
CP123697.1 See Comparison
NZ_AP027703.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_KY991368.1 See Comparison
NZ_HM070379.1 See Comparison
NZ_CP117335.1 See Comparison
CP063728.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_CP103575.1 See Comparison
NZ_OP038297.1 See Comparison
NZ_CP081523.1 See Comparison
OW849385.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP084003.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
NZ_KY991368.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
NZ_CP039609.1 See Comparison
NZ_CP035388.1 See Comparison
NZ_CP030230.1 See Comparison
CP123697.1 See Comparison
NZ_AP027703.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_AP027541.1 See Comparison
CP082455.1 See Comparison
NC_012916.1 See Comparison
NZ_AP027672.1 See Comparison
NZ_HM070379.1 See Comparison
CP063728.1 See Comparison
NZ_CP103575.1 See Comparison
NZ_CP117335.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_OP038297.1 See Comparison
NZ_CP081523.1 See Comparison
OW849385.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP084003.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
NC_012916.1 See Comparison
CP082455.1 See Comparison
CP123697.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
NZ_CP039609.1 See Comparison
NZ_CP035388.1 See Comparison
NZ_CP030230.1 See Comparison
NZ_HM070379.1 See Comparison
NZ_AP027703.1 See Comparison
NZ_AP027647.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
NZ_KY991368.1 See Comparison
CP063728.1 See Comparison
NZ_CP117335.1 See Comparison
NZ_CP117331.1 See Comparison
NZ_OP038297.1 See Comparison
NZ_CP103474.1 See Comparison
NZ_CP103575.1 See Comparison
NZ_CP081523.1 See Comparison
OW849385.1 See Comparison
NZ_CP084003.1 See Comparison
NZ_CP081672.1 See Comparison
NZ_CP081520.1 See Comparison
NZ_CP081670.1 See Comparison
NZ_CP081521.1 See Comparison
NZ_AP027647.1 See Comparison
CP082455.1 See Comparison
NC_019101.1 See Comparison
NC_019086.1 See Comparison
NC_012916.1 See Comparison
NZ_CP039609.1 See Comparison
NZ_CP035388.1 See Comparison
NZ_CP030230.1 See Comparison
NZ_AP027703.1 See Comparison
CP123697.1 See Comparison
NZ_AP027541.1 See Comparison
NZ_AP027672.1 See Comparison
NZ_HM070379.1 See Comparison
NZ_KY991368.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore