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v. 2024_05_31_v2
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Typing
Plasmid NC_019086.1
Sequence
Nucleotide Information
Accession
NC_019086.1
Description
Escherichia coli plasmid pECY6-7, complete sequence
Source
refseq
Topology
circular
Length
2699 bp
GC Content
0.50 %
Created at NCBI
Nov. 2, 2012
Host Taxonomy
According to NCBI Taxonomy
Assigned Host
Escherichia coli (562)
Lineage
Superkingdom
Bacteria (2)
Phylum
Pseudomonadota (1224)
Class
Gammaproteobacteria (1236)
Order
Enterobacterales (91347)
Family
Enterobacteriaceae (543)
Genus
Escherichia (561)
Species
Escherichia_coli (562)
Strain
Biosample
Curated Collection Information
Accession
14225397
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
Original Query
Peru
Original Query Type
name
Coordinates (Lat/Lon)
-6.87/-75.05
Address
Peru
ECOSYSTEM
Original Query
fecal sample
Classification
fecal,gastrointestinal_system,host_associated
Host-associated Taxon
DISEASE
Original Query
None
DOID/SYMP
Visualization
PNG
JSON
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based on Mash distance
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NZ_CP081523.1
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NZ_CP081672.1
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NZ_CP081520.1
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NZ_CP081670.1
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NZ_CP081521.1
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NC_012916.1
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NZ_CP030230.1
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NZ_OP038297.1
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NZ_CP084003.1
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NZ_CP103474.1
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NZ_CP103575.1
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NZ_CP081670.1
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NZ_KY991368.1
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NZ_AP027647.1
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NZ_OP038297.1
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NZ_CP103575.1
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NZ_CP081672.1
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NZ_CP081520.1
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NZ_CP081670.1
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NZ_CP081672.1
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NZ_CP081520.1
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NZ_CP081670.1
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NZ_CP081521.1
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NZ_CP039609.1
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NZ_CP035388.1
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NZ_CP030230.1
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CP063728.1
See Comparison
MF554640.1
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NZ_AP027703.1
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NZ_AP027647.1
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NZ_AP027541.1
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NZ_AP027672.1
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CP123697.1
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NZ_KY991368.1
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NZ_HM070379.1
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NZ_OP038297.1
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NZ_CP117335.1
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NZ_CP117331.1
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Identical Plasmids
100% Sequence Identity
NZ_KY991368.1
Sequence
Accession
:
NZ_KY991368.1
Description
: Salmonella enterica subsp. enterica serovar Muenchen strain CVM N44358F plasmid N44358F_qnrB19, complete sequence
Source
: refseq
Created at NCBI
: June 3, 2020
Host Taxonomy
Assigned Host
:
Salmonella enterica (596)
Superkingdom
:
Bacteria (2)
Phylum
:
Pseudomonadota (1224)
Class
:
Gammaproteobacteria (1236)
Order
:
Enterobacterales (91347)
Family
:
Enterobacteriaceae (543)
Genus
:
Salmonella (590)
Species
:
Salmonella_enterica (28901)
Strain
:
Biosample
Accession
:
14227803
GEOGRAPHICAL INFORMATION
Original Query
: None
Original Query Type
: None
Address
: None
Coordinates
(Lat/Lon):
ECOSYSTEM
Original Query
: USA
Classification
: location
Host-associated Taxon
:
Visualization
PNG
JSON
Plasmid Visualization
JSON
GENBANK
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
NUCCORE ACC
Source
Element Name
Display
Sequence
Favorite
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
NUCCORE ACC
Gene
Locus Tag
Product
Protein id
Codon Start
Translation Table
GO process
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
NUCCORE ACC
Analysis Software Name
Reference Database Version
Gene Symbol
Gene Name
Drug Class
Antimicrobial Agent
Gene Start
Gene Stop
Gene Length
Strand Orientation
Sequence Identity (%)
Coverage (%)
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (
PMLST
)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
NUCCORE ACC
Contigs
md5 hash
Replicon Type
Relaxase Type
MPF Type
OriT Type
Predicted Mobility
Primary Cluster ID
Secondary Cluster ID
Observed Host Range Ncbi Rank
Observed Host Range Ncbi Name
Mash Nearest Neighbor
Mash Neighbor Distance
Mash Neighbor Identification
Reported Host Range Lit Rank
Reported Host Range Lit Name
Replicon Type Accession
Relaxase Type Accession
MPF Type Accession
OriT Type Accession
Associated PMID(s)
BLAST results of detected typing markers by MOB-type
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore
NUCCORE ACC
biomarker
MOB-suite ID
Element
Start
End
Strand
Identity
Coverage
Evalue
Bitscore