Plasmid NZ_HM070379.1
Sequence
Nucleotide Information
| Accession | NZ_HM070379.1 |
|---|---|
| Description | Salmonella enterica subsp. enterica serovar Infantis strain S20 plasmid pMK100, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 2699 bp |
| GC Content | 0.50 % |
| Created at NCBI | June 3, 2020 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Salmonella enterica (595) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Salmonella (590) |
| Species | Salmonella_enterica (28901) |
| Strain |
Biosample
Curated Collection Information
| Accession | 14225581 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | Colombia |
|---|---|
| Original Query Type | name |
| Coordinates (Lat/Lon) | 2.89/-73.78 |
| Address | Colombia |
ECOSYSTEM
| Original Query | chicken |
|---|---|
| Classification | host_associated |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Similar Plasmids
based on Mash distance
Identical Plasmids
100% Sequence Identity
-
Sequence
- Accession: NC_012916.1
- Description: Salmonella enterica plasmid pSGI15, complete sequence
- Source: refseq
- Created at NCBI: July 2, 2009
-
Host Taxonomy
Assigned Host: Salmonella enterica (28901)- Superkingdom : Bacteria (2)
- Phylum : Pseudomonadota (1224)
- Class : Gammaproteobacteria (1236)
- Order : Enterobacterales (91347)
- Family : Enterobacteriaceae (543)
- Genus : Salmonella (590)
- Species : Salmonella_enterica (28901)
- Strain:
-
Biosample
Accession: 14229499 - GEOGRAPHICAL INFORMATION
- Original Query: None
- Original Query Type: None
- Address: None
- Coordinates (Lat/Lon):
- ECOSYSTEM
- Original Query: None
- Classification: None
- Host-associated Taxon:
Visualization
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | qnrB19 | copy | ||
| PGAG | quinolone resistance pentapeptide repeat protein QnrB19 | copy | ||
| PGAG | hypothetical protein | copy | ||
| MOB-typer | rep_cluster_2335 | copy | ||
| MOB-typer | MOBP | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 5 of 5 entries
Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
| Loading... | |||||||
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||||
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||||
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| oriT | CP018223 | MOBP | 1584 | 1758 | minus | 100 | 100 | 2.5600000000000002e-86 | 324 |
| replicon | KU302809_00001 | rep_cluster_2335 | 1736 | 2228 | plus | 92.51 | 81 | 0 | 706 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 2 of 2 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
| Loading... | ||||||||
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |