Plasmid NZ_CP066907.1

Sequence

Nucleotide Information

Accession NZ_CP066907.1
Description Klebsiella pneumoniae strain XHKP502 plasmid pXHKP502-3, complete sequence
Source refseq
Topology circular
Length 85185 bp
GC Content 0.54 %
Created at NCBI July 22, 2022



Assembly

Genome Data Information

Accession GCF_024346815.1
Assembly Coverage 311


Biosample

Curated Collection Information

Accession 17173807

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.21N;121.45E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.21/121.45
Address Taiyuan Road, 小木桥, Tianpinglu, Xuhui District, Shanghai, 200031, China

ECOSYSTEM
Original Query Homo sapiens,Tracheal intubation
Classification host_associated,respiratory_system,trachea
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Subarachnoid hemorrhage
DOID/SYMP
  • Intracranial berry aneurysm (DOID:0060228 )
  • An intracranial aneurysm with a characteristic rounded shape; the most common form of cerebral aneurysm.

Visualization




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based on Mash distance

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NZ_CP034126.1 See Comparison
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NZ_CP136848.1 See Comparison
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NZ_CP136271.1 See Comparison
NZ_CP132051.1 See Comparison
NZ_CP130664.1 See Comparison
NZ_CP130267.1 See Comparison
NZ_CP130261.1 See Comparison
NZ_CP125168.1 See Comparison
NZ_CP118694.1 See Comparison
NZ_CP154395.1 See Comparison
NZ_CP154421.1 See Comparison
NZ_CP154305.1 See Comparison
NZ_CP154390.1 See Comparison
NZ_CP152442.1 See Comparison
NZ_CP152451.1 See Comparison
NZ_CP152446.1 See Comparison
NZ_CP154276.1 See Comparison
NZ_CP141669.1 See Comparison
NZ_CP146604.1 See Comparison
NZ_CP146194.1 See Comparison
NZ_CP147743.1 See Comparison
NZ_CP147752.1 See Comparison
NZ_CP141603.1 See Comparison
NZ_CP141068.1 See Comparison
NZ_CP141783.1 See Comparison
NZ_CP054771.1 See Comparison
NZ_CP054759.1 See Comparison
NZ_CP054783.1 See Comparison
NZ_CP054723.1 See Comparison
NZ_CP054753.1 See Comparison
NZ_CP054735.1 See Comparison
NZ_CP054765.1 See Comparison
NZ_CP054777.1 See Comparison
NZ_CP069176.1 See Comparison
NZ_CP054741.1 See Comparison
NZ_CP054729.1 See Comparison
NZ_CP054747.1 See Comparison
NZ_CP047195.1 See Comparison
NZ_CP066257.1 See Comparison
NZ_CP064238.1 See Comparison
NZ_CP064244.1 See Comparison
NZ_CP063836.1 See Comparison
NZ_CP031937.1 See Comparison
NZ_MT035876.1 See Comparison
NZ_MH643790.1 See Comparison
NZ_CP060745.1 See Comparison
NZ_MT090960.1 See Comparison
NZ_CP107349.1 See Comparison
NZ_CP119177.1 See Comparison
NZ_CP107387.1 See Comparison
NZ_CP107376.1 See Comparison
NZ_CP106763.1 See Comparison
NZ_CP107331.1 See Comparison
NZ_CP107324.1 See Comparison
NZ_CP107316.1 See Comparison
NZ_CP107338.1 See Comparison
NZ_CP109951.1 See Comparison
NZ_CP100109.1 See Comparison
NZ_CP100090.1 See Comparison
NZ_CP100113.1 See Comparison
NZ_CP100097.1 See Comparison
NZ_CP100101.1 See Comparison
NZ_CP100074.1 See Comparison
NZ_CP102839.1 See Comparison
NZ_CP104314.1 See Comparison
NZ_CP102641.1 See Comparison
NZ_CP102394.1 See Comparison
NZ_CP101772.1 See Comparison
NZ_CP102194.1 See Comparison
NZ_CP101767.1 See Comparison
NZ_CP099416.1 See Comparison
NZ_CP101783.1 See Comparison
NZ_CP101788.1 See Comparison
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NZ_CP095243.1 See Comparison
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NZ_CP082768.1 See Comparison
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NZ_CP077776.1 See Comparison
NZ_CP073375.1 See Comparison
NZ_CP041376.1 See Comparison
NZ_CP018341.1 See Comparison
NZ_CP033957.1 See Comparison
NZ_CP034126.1 See Comparison
NZ_CP029382.1 See Comparison
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Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore