Plasmid NZ_CP141603.1
Sequence
Nucleotide Information
| Accession | NZ_CP141603.1 |
|---|---|
| Description | Klebsiella pneumoniae strain KP3682 plasmid pKP3682-3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 84876 bp |
| GC Content | 0.54 % |
| Created at NCBI | Jan. 17, 2024 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 38937583 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 22.28N;113.58E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 22.28/113.58 |
| Address | Haiyu Road, Xiangwan Subdistrict, Xiangzhou District, Zhuhai, Guangdong Province, 519000, China |
ECOSYSTEM
| Original Query | Homo sapiens,Bronchoalveolar lavage fluid |
|---|---|
| Classification | bronchi,host_associated,respiratory_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | infection |
|---|---|
| DOID/SYMP |
|
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | dfrA14 | copy | ||
| amrfinderplus | qnrS1 | copy | ||
| amrfinderplus | tet(A) | copy | ||
| amrfinderplus | sul2 | copy | ||
| amrfinderplus | blaLAP-2 | copy | ||
| PGAG | DotI/IcmL/TraM family protein | copy | ||
| PGAG | DotH/IcmK family type IV secretion protein | copy | ||
| PGAG | traO | copy | ||
| PGAG | traP | copy | ||
| PGAG | traQ | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 100 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| replicon | 000119__MF133496_00001 | IncFII | 18937 | 19563 | plus | 100 | 100 | 0 | 1158 |
| relaxase | NC_021198_00256 | MOBP | 69516 | 71441 | plus | 95.327 | 100 | 0 | 1219 |
| mate-pair-formation | NC_021198_00235 | MPF_I | 3 | 194 | plus | 98.438 | 99 | 8.25e-33 | 132 |
| mate-pair-formation | NC_021198_00236 | MPF_I | 208 | 1308 | plus | 95.64 | 100 | 0 | 639 |
| mate-pair-formation | NC_021198_00238 | MPF_I | 2662 | 3378 | plus | 86.611 | 100 | 3.52e-125 | 397 |
| mate-pair-formation | NC_021198_00239 | MPF_I | 3391 | 3903 | plus | 95.322 | 97 | 2.38e-76 | 254 |
| mate-pair-formation | NC_021198_00240 | MPF_I | 3980 | 4378 | plus | 92.481 | 100 | 6.379999999999996e-69 | 231 |
| mate-pair-formation | NC_021198_00243 | MPF_I | 8055 | 9248 | plus | 95.729 | 100 | 0 | 749 |
| mate-pair-formation | NC_021198_00249 | MPF_I | 15328 | 17517 | plus | 96.986 | 100 | 0 | 1388 |
| mate-pair-formation | NC_021198_00230 | MPF_I | 78269 | 79084 | plus | 95.221 | 100 | 3.8799999999999995e-176 | 545 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 12 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |