Plasmid NZ_CP066906.1

Sequence

Nucleotide Information

Accession NZ_CP066906.1
Description Klebsiella pneumoniae strain XHKP502 plasmid pXHKP502-2, complete sequence
Source refseq
Topology circular
Length 85781 bp
GC Content 0.55 %
Created at NCBI July 22, 2022



Assembly

Genome Data Information

Accession GCF_024346815.1
Assembly Coverage 311


Biosample

Curated Collection Information
Accession 17173807

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.21N;121.45E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.21/121.45
Address Taiyuan Road, 小木桥, Tianpinglu, Xuhui District, Shanghai, 200031, China

ECOSYSTEM
Original Query Homo sapiens,Tracheal intubation
Classification host_associated,respiratory_system,trachea
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Subarachnoid hemorrhage
DOID/SYMP
  • Intracranial berry aneurysm (DOID:0060228 )
    • An intracranial aneurysm with a characteristic rounded shape; the most common form of cerebral aneurysm.

Visualization

PNG JSON

Plasmids from same Biosample




Plasmid Visualization

JSON GENBANK

SourceElement Name Display Sequence Favorite
amrfinderplusblaSHV-12copy
amrfinderplusmerTcopy
amrfinderplusmerCcopy
amrfinderplusblaCTX-M-65copy
amrfinderplusblaKPC-2copy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
PGAGsite-specific integrasecopy
PGAGhypothetical proteincopy
PGAGhypothetical proteincopy
SourceElement NameDisplaySequenceFavorite
Showing 1 to 10 of 110 entries
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Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process
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NUCCORE ACCGeneLocus TagProductProtein idCodon StartTranslation TableGO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)
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NUCCORE ACCAnalysis Software NameReference Database VersionGene SymbolGene NameDrug ClassAntimicrobial AgentGene StartGene StopGene LengthStrand OrientationSequence Identity (%)Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACCReplicon TypeRelaxase TypeMPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank
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NUCCORE ACCReplicon TypeRelaxase TypeMPF TypeOriT TypePredicted MobilityPrimary Cluster IDSecondary Cluster IDObserved Host Range Ncbi NameMash Neighbor DistanceReported Host Range Lit Rank




BLAST results of detected typing markers by MOB-type
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
replicon000210__KF623109_00045IncU2388924449minus10010001037
repliconMH263653_00001IncFIA4405944814minus10010001397
repliconJN232517IncFII4491445173plus1001002.26e-133481
replicon000204__CP008701_00115IncR8435185246minus98.54910001581
mate-pair-formationNC_014312_00116MPF_F5107451376minus1001004.22e-61207
biomarkerMOB-suite IDElementStartEndStrandIdentityCoverageEvalueBitscore
Showing 1 to 5 of 5 entries


Detected typing markers by plasmidfinder
NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2
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NUCCORE ACCTypingIdentityCoverageStartEndStrandOrganism L1Organism L2