Plasmid NZ_CP100101.1

Sequence

Nucleotide Information

Accession NZ_CP100101.1
Description Klebsiella pneumoniae strain HSKP43 plasmid pHSKP43-3, complete sequence
Source refseq
Topology circular
Length 87095 bp
GC Content 0.54 %
Created at NCBI Oct. 29, 2022



Assembly

Genome Data Information

Accession GCF_025884175.1
Assembly Coverage 200


Biosample

Curated Collection Information

Accession 29388309

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 31.02N;121.04E
Original Query Type coordinates
Coordinates (Lat/Lon) 31.02/121.04
Address Laozhufeng Highway, Liantang, Qingpu District, Shanghai, China

ECOSYSTEM
Original Query Homo sapiens,sputum
Classification host_associated,respiratory_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query None
DOID/SYMP

Visualization


Plasmids from same Biosample



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based on Mash distance

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NZ_CP047195.1 See Comparison
NZ_CP032243.1 See Comparison
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NZ_CP119177.1 See Comparison
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NZ_CP147743.1 See Comparison
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NZ_CP127156.1 See Comparison
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NZ_CP154421.1 See Comparison
NZ_CP154305.1 See Comparison
NZ_CP154390.1 See Comparison
NZ_CP152442.1 See Comparison
NZ_CP152451.1 See Comparison
NZ_CP152446.1 See Comparison
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NZ_CP141783.1 See Comparison
NZ_CP141068.1 See Comparison
NZ_CP054753.1 See Comparison
NZ_CP054765.1 See Comparison
NZ_CP054741.1 See Comparison
NZ_CP054771.1 See Comparison
NZ_CP054729.1 See Comparison
NZ_CP054759.1 See Comparison
NZ_CP054747.1 See Comparison
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NZ_CP047195.1 See Comparison
NZ_CP032243.1 See Comparison
NZ_CP069176.1 See Comparison
NZ_CP066257.1 See Comparison
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NZ_CP064244.1 See Comparison
NZ_CP063836.1 See Comparison
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NZ_MT090960.1 See Comparison
NZ_CP107387.1 See Comparison
NZ_CP119177.1 See Comparison
NZ_CP116906.1 See Comparison
NZ_CP107376.1 See Comparison
NZ_CP106763.1 See Comparison
NZ_CP107331.1 See Comparison
NZ_CP107324.1 See Comparison
NZ_CP109976.1 See Comparison
NZ_CP107349.1 See Comparison
NZ_CP107316.1 See Comparison
NZ_CP107338.1 See Comparison
NZ_CP109951.1 See Comparison
NZ_CP100109.1 See Comparison
NZ_CP100090.1 See Comparison
NZ_CP100113.1 See Comparison
NZ_CP100097.1 See Comparison
NZ_CP100074.1 See Comparison
NZ_CP102641.1 See Comparison
NZ_CP104314.1 See Comparison
NZ_CP102394.1 See Comparison
NZ_CP103318.1 See Comparison
NZ_CP102194.1 See Comparison
NZ_CP102839.1 See Comparison
NZ_CP101767.1 See Comparison
NZ_CP066907.1 See Comparison
NZ_CP101783.1 See Comparison
NZ_CP101788.1 See Comparison
NZ_CP099416.1 See Comparison
NZ_CP090346.1 See Comparison
NZ_CP101772.1 See Comparison
NZ_CP087642.1 See Comparison
NZ_CP095249.1 See Comparison
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NZ_CP095266.1 See Comparison
NZ_CP095243.1 See Comparison
NZ_CP087149.1 See Comparison
NZ_CP087154.1 See Comparison
NZ_CP092789.1 See Comparison
NZ_CP055297.1 See Comparison
NZ_CP092796.1 See Comparison
NZ_CP090465.1 See Comparison
NZ_CP090435.1 See Comparison
NZ_CP088994.1 See Comparison
NZ_CP077776.1 See Comparison
NZ_CP073375.1 See Comparison
NZ_CP091071.1 See Comparison
NZ_CP066154.1 See Comparison
NZ_CP085892.1 See Comparison
NZ_CP082756.1 See Comparison
NZ_CP082762.1 See Comparison
NZ_CP082768.1 See Comparison
NZ_CP041376.1 See Comparison
NZ_CP033957.1 See Comparison
NZ_CP034126.1 See Comparison
NZ_CP029382.1 See Comparison
NZ_CP136848.1 See Comparison
CP139240.1 See Comparison
CP139222.1 See Comparison
NZ_CP138522.1 See Comparison
NZ_CP136271.1 See Comparison
NZ_CP137349.1 See Comparison
NZ_CP132051.1 See Comparison
NZ_CP130261.1 See Comparison
NZ_CP125341.1 See Comparison
NZ_CP130664.1 See Comparison
NZ_CP130267.1 See Comparison
NZ_CP118694.1 See Comparison
NZ_CP127156.1 See Comparison
NZ_CP125348.1 See Comparison
NZ_CP154421.1 See Comparison
NZ_CP154305.1 See Comparison
NZ_CP154390.1 See Comparison
NZ_CP152442.1 See Comparison
NZ_CP154276.1 See Comparison
NZ_CP154395.1 See Comparison
NZ_CP152451.1 See Comparison
NZ_CP152446.1 See Comparison
NZ_CP146604.1 See Comparison
NZ_CP147743.1 See Comparison
NZ_CP147752.1 See Comparison
NZ_CP146194.1 See Comparison
NZ_CP141783.1 See Comparison
NZ_CP141669.1 See Comparison
NZ_CP141603.1 See Comparison
NZ_CP054759.1 See Comparison
NZ_CP141068.1 See Comparison
NZ_CP054783.1 See Comparison
NZ_CP054753.1 See Comparison
NZ_CP054765.1 See Comparison
NZ_CP054741.1 See Comparison
NZ_CP054729.1 See Comparison
NZ_CP054747.1 See Comparison
NZ_CP054771.1 See Comparison
NZ_CP054723.1 See Comparison
NZ_CP054735.1 See Comparison
NZ_CP054777.1 See Comparison
NZ_CP069176.1 See Comparison
NZ_CP047195.1 See Comparison
NZ_CP032243.1 See Comparison
NZ_CP066257.1 See Comparison
NZ_MH643790.1 See Comparison
NZ_CP064244.1 See Comparison
NZ_CP063836.1 See Comparison
NZ_CP064238.1 See Comparison
NZ_MN182748.1 See Comparison
NZ_CP031937.1 See Comparison
NZ_MT035876.1 See Comparison
NZ_MT090960.1 See Comparison
NZ_CP107349.1 See Comparison
NZ_CP119177.1 See Comparison
NZ_CP116906.1 See Comparison
NZ_CP107376.1 See Comparison
NZ_CP107331.1 See Comparison
NZ_CP107324.1 See Comparison
NZ_CP107387.1 See Comparison
NZ_CP107316.1 See Comparison
NZ_CP107338.1 See Comparison
NZ_CP109951.1 See Comparison
NZ_CP100109.1 See Comparison
NZ_CP109976.1 See Comparison
NZ_CP100090.1 See Comparison
NZ_CP100113.1 See Comparison
NZ_CP100097.1 See Comparison
NZ_CP100074.1 See Comparison
NZ_CP104314.1 See Comparison
NZ_CP106763.1 See Comparison
NZ_CP103318.1 See Comparison
NZ_CP102641.1 See Comparison
NZ_CP102839.1 See Comparison
NZ_CP102394.1 See Comparison
NZ_CP101783.1 See Comparison
NZ_CP102194.1 See Comparison
NZ_CP101788.1 See Comparison
NZ_CP090346.1 See Comparison
NZ_CP101767.1 See Comparison
NZ_CP101772.1 See Comparison
NZ_CP099416.1 See Comparison
NZ_CP066907.1 See Comparison
NZ_CP066154.1 See Comparison
CP076674.1 See Comparison
NZ_CP087642.1 See Comparison
NZ_CP095266.1 See Comparison
NZ_CP095243.1 See Comparison
NZ_CP095249.1 See Comparison
NZ_CP087149.1 See Comparison
NZ_CP087154.1 See Comparison
NZ_CP092796.1 See Comparison
NZ_CP092789.1 See Comparison
NZ_CP091071.1 See Comparison
NZ_CP085892.1 See Comparison
NZ_CP088994.1 See Comparison
NZ_CP090465.1 See Comparison
NZ_CP090435.1 See Comparison
NZ_CP082762.1 See Comparison
NZ_CP082768.1 See Comparison
NZ_CP082756.1 See Comparison
NZ_CP033957.1 See Comparison
NZ_CP077776.1 See Comparison
NZ_CP073375.1 See Comparison
NZ_CP055297.1 See Comparison
NZ_CP041376.1 See Comparison
NZ_CP034126.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore