Plasmid NZ_CP100101.1
Sequence
Nucleotide Information
| Accession | NZ_CP100101.1 |
|---|---|
| Description | Klebsiella pneumoniae strain HSKP43 plasmid pHSKP43-3, complete sequence |
| Source | refseq |
| Topology | circular |
| Length | 87095 bp |
| GC Content | 0.54 % |
| Created at NCBI | Oct. 29, 2022 |
Host Taxonomy
According to NCBI Taxonomy
| Assigned Host | Klebsiella pneumoniae (573) |
|---|
Lineage
| Superkingdom | Bacteria (2) |
|---|---|
| Phylum | Pseudomonadota (1224) |
| Class | Gammaproteobacteria (1236) |
| Order | Enterobacterales (91347) |
| Family | Enterobacteriaceae (543) |
| Genus | Klebsiella (570) |
| Species | Klebsiella_pneumoniae (573) |
| Strain |
Biosample
Curated Collection Information
| Accession | 29388309 |
|---|
PLASMID INFORMATION
GEOGRAPHICAL INFORMATION
| Original Query | 31.02N;121.04E |
|---|---|
| Original Query Type | coordinates |
| Coordinates (Lat/Lon) | 31.02/121.04 |
| Address | Laozhufeng Highway, Liantang, Qingpu District, Shanghai, China |
ECOSYSTEM
| Original Query | Homo sapiens,sputum |
|---|---|
| Classification | host_associated,respiratory_system |
| Host-associated Taxon |
|
DISEASE
| Original Query | None |
|---|---|
| DOID/SYMP |
Visualization
Plasmids from same Biosample
Similar Plasmids
based on Mash distance
Plasmid Visualization
Grays
Blues
Purples
Reds
Oranges
Greens
100
Hex
R
G
B
| Source | Element Name | Display | Sequence | Favorite |
|---|---|---|---|---|
| amrfinderplus | catA2 | copy | ||
| rgi | catII from Escherichia coli K-12 | copy | ||
| amrfinderplus | qnrS1 | copy | ||
| amrfinderplus | tet(A) | copy | ||
| amrfinderplus | sul2 | copy | ||
| amrfinderplus | blaLAP-2 | copy | ||
| amrfinderplus | dfrA14 | copy | ||
| PGAG | DUF2913 family protein | copy | ||
| PGAG | RepA family replication protein | copy | ||
| PGAG | hypothetical protein | copy | ||
| Source | Element Name | Display | Sequence | Favorite |
Showing 1 to 10 of 104 entries
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Annotations
based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Gene | Locus Tag | Product | Protein id | Codon Start | Translation Table | GO process |
Antimicrobial Resistance
based on NCBIAMRFinder and CARD
| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Analysis Software Name | Reference Database Version | Gene Symbol | Gene Name | Drug Class | Antimicrobial Agent | Gene Start | Gene Stop | Gene Length | Strand Orientation | Sequence Identity (%) | Coverage (%) |
Typing
based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
|---|---|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Replicon Type | Relaxase Type | MPF Type | OriT Type | Predicted Mobility | Primary Cluster ID | Secondary Cluster ID | Observed Host Range Ncbi Name | Mash Neighbor Distance | Reported Host Range Lit Rank |
BLAST results of detected typing markers by MOB-type
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
|---|---|---|---|---|---|---|---|---|---|
| relaxase | NC_021198_00256 | MOBP | 34566 | 36491 | minus | 95.327 | 100 | 0 | 1219 |
| mate-pair-formation | NC_021198_00249 | MPF_I | 3614 | 5803 | minus | 96.986 | 100 | 0 | 1388 |
| mate-pair-formation | NC_021198_00243 | MPF_I | 11883 | 13076 | minus | 95.729 | 100 | 0 | 749 |
| mate-pair-formation | NC_021198_00240 | MPF_I | 16753 | 17151 | minus | 92.481 | 100 | 6.379999999999996e-69 | 231 |
| mate-pair-formation | NC_021198_00239 | MPF_I | 17228 | 17740 | minus | 95.322 | 97 | 2.38e-76 | 254 |
| mate-pair-formation | NC_021198_00238 | MPF_I | 17753 | 18469 | minus | 86.611 | 100 | 3.52e-125 | 397 |
| mate-pair-formation | NC_021198_00236 | MPF_I | 19823 | 20923 | minus | 95.64 | 100 | 0 | 639 |
| mate-pair-formation | NC_021198_00235 | MPF_I | 20937 | 21638 | minus | 96.581 | 100 | 2.48e-151 | 472 |
| mate-pair-formation | NC_021198_00234 | MPF_I | 21677 | 22027 | minus | 91.453 | 100 | 6.28e-58 | 198 |
| mate-pair-formation | NC_021198_00230 | MPF_I | 26923 | 27738 | minus | 95.221 | 100 | 3.8799999999999995e-176 | 545 |
| biomarker | MOB-suite ID | Element | Start | End | Strand | Identity | Coverage | Evalue | Bitscore |
Showing 1 to 10 of 11 entries
Detected typing markers by plasmidfinder
| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |
|---|---|---|---|---|---|---|---|---|
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| NUCCORE ACC | Typing | Identity | Coverage | Start | End | Strand | Organism L1 | Organism L2 |