Plasmid NZ_CP018341.1

Sequence

Nucleotide Information

Accession NZ_CP018341.1
Description Klebsiella pneumoniae isolate Kp_Goe_154414 plasmid pKp_Goe_414-4, complete sequence
Source refseq
Topology circular
Length 81641 bp
GC Content 0.54 %
Created at NCBI Dec. 19, 2016



Assembly

Genome Data Information

Accession GCF_001902335.1
Assembly Coverage 147


Biosample

Curated Collection Information
Accession 5412805

PLASMID INFORMATION
Genotype MLST ST23

GEOGRAPHICAL INFORMATION
Original Query 51.53919016N;9.91156249E
Original Query Type coordinates
Coordinates (Lat/Lon) 51.54/9.91
Address Königsstieg, Egelsberg, Weststadt, Göttingen, Landkreis Göttingen, Lower Saxony, 37081, Germany

ECOSYSTEM
Original Query Homo sapiens,wound swab
Classification host_associated,wound
Host-associated Taxon
  • Homo sapiens (9606)
Host-associated Age 36
Host-associated Sex male

DISEASE
Original Query wound (hand)
DOID/SYMP
  • Disease (DOID:4 )
    • A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP029382.1 See Comparison
NZ_CP134810.1 See Comparison
NZ_CP127156.1 See Comparison
NZ_CP125341.1 See Comparison
NZ_CP125348.1 See Comparison
NZ_CP125168.1 See Comparison
NZ_CP146604.1 See Comparison
NZ_CP142694.1 See Comparison
NZ_MF133496.1 See Comparison
NZ_MH643790.1 See Comparison
NZ_MN182748.1 See Comparison
NZ_CP060745.1 See Comparison
NZ_CP116906.1 See Comparison
NZ_CP109976.1 See Comparison
NZ_CP090465.1 See Comparison
NZ_CP102641.1 See Comparison
NZ_CP066907.1 See Comparison
NZ_CP088994.1 See Comparison
NZ_CP081822.1 See Comparison
NZ_CP082899.1 See Comparison
NZ_CP125341.1 See Comparison
NZ_CP134810.1 See Comparison
NZ_CP127156.1 See Comparison
NZ_CP125348.1 See Comparison
NZ_CP029382.1 See Comparison
NZ_CP125168.1 See Comparison
NZ_MF133496.1 See Comparison
NZ_CP142694.1 See Comparison
NZ_CP146604.1 See Comparison
NZ_MH643790.1 See Comparison
NZ_MN182748.1 See Comparison
NZ_CP060745.1 See Comparison
NZ_CP109976.1 See Comparison
NZ_CP116906.1 See Comparison
NZ_CP066907.1 See Comparison
NZ_CP102641.1 See Comparison
NZ_CP090465.1 See Comparison
NZ_CP081822.1 See Comparison
NZ_CP088994.1 See Comparison
NZ_CP082899.1 See Comparison
NZ_CP029382.1 See Comparison
NZ_CP125348.1 See Comparison
NZ_CP134810.1 See Comparison
NZ_CP127156.1 See Comparison
NZ_MF133496.1 See Comparison
NZ_CP125341.1 See Comparison
NZ_CP125168.1 See Comparison
NZ_CP146604.1 See Comparison
NZ_CP142694.1 See Comparison
NZ_MH643790.1 See Comparison
NZ_MN182748.1 See Comparison
NZ_CP060745.1 See Comparison
NZ_CP116906.1 See Comparison
NZ_CP082899.1 See Comparison
NZ_CP102641.1 See Comparison
NZ_CP066907.1 See Comparison
NZ_CP109976.1 See Comparison
NZ_CP090465.1 See Comparison
NZ_CP088994.1 See Comparison
NZ_CP081822.1 See Comparison
NZ_CP029382.1 See Comparison
NZ_CP134810.1 See Comparison
NZ_CP127156.1 See Comparison
NZ_CP125341.1 See Comparison
NZ_CP125348.1 See Comparison
NZ_CP125168.1 See Comparison
NZ_CP142694.1 See Comparison
NZ_CP146604.1 See Comparison
NZ_CP109976.1 See Comparison
NZ_MF133496.1 See Comparison
NZ_MH643790.1 See Comparison
NZ_MN182748.1 See Comparison
NZ_CP060745.1 See Comparison
NZ_CP116906.1 See Comparison
NZ_CP102641.1 See Comparison
NZ_CP066907.1 See Comparison
NZ_CP146604.1 See Comparison
NZ_CP082899.1 See Comparison
NZ_CP081822.1 See Comparison
NZ_CP018341.1 See Comparison
NZ_CP090465.1 See Comparison
NZ_CP088994.1 See Comparison
NZ_CP029382.1 See Comparison
NZ_CP134810.1 See Comparison
NZ_CP127156.1 See Comparison
NZ_CP125341.1 See Comparison
NZ_CP125348.1 See Comparison
NZ_CP125168.1 See Comparison
NZ_CP142694.1 See Comparison
NZ_CP116906.1 See Comparison
NZ_MF133496.1 See Comparison
NZ_MH643790.1 See Comparison
NZ_CP060745.1 See Comparison
NZ_MN182748.1 See Comparison
NZ_CP066907.1 See Comparison
NZ_CP109976.1 See Comparison
NZ_CP102641.1 See Comparison
NZ_CP029382.1 See Comparison
NZ_CP090465.1 See Comparison
NZ_CP088994.1 See Comparison
NZ_CP082899.1 See Comparison
NZ_CP081822.1 See Comparison
NZ_CP146604.1 See Comparison
NZ_CP125341.1 See Comparison
NZ_CP125348.1 See Comparison
NZ_CP125168.1 See Comparison
NZ_CP134810.1 See Comparison
NZ_CP127156.1 See Comparison
NZ_MH643790.1 See Comparison
NZ_CP142694.1 See Comparison
NZ_MF133496.1 See Comparison
NZ_CP060745.1 See Comparison
NZ_MN182748.1 See Comparison
NZ_CP116906.1 See Comparison
NZ_CP109976.1 See Comparison
NZ_CP102641.1 See Comparison
NZ_CP090465.1 See Comparison
NZ_CP066907.1 See Comparison
NZ_CP081822.1 See Comparison
NZ_CP088994.1 See Comparison
NZ_CP082899.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore