Plasmid NZ_CP061120.1

Sequence

Nucleotide Information

Accession NZ_CP061120.1
Description Salmonella enterica subsp. enterica serovar Typhimurium strain S520 plasmid pS520_1, complete sequence
Source refseq
Topology circular
Length 253797 bp
GC Content 0.46 %
Created at NCBI Jan. 18, 2021



Assembly

Genome Data Information

Accession GCF_015732575.1
Assembly Coverage 300


Biosample

Curated Collection Information

Accession 15962526

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.2N;120.2E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.20/120.20
Address 滨和路, 江汉社区, Changhe, Binjiang District, Zhejiang, 310052, China

ECOSYSTEM
Original Query Homo sapiens,stool
Classification fecal,gastrointestinal_system,host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Diarrhea
DOID/SYMP
  • Diarrhea (DOID:13250 )
  • A gastrointestinal system disease described as the condition of having frequent loose or liquid bowel movements. Acute diarrhea is a common cause of death in developing countries and the second most common cause of infant deaths worldwide. The loss of fluids through diarrhea can cause severe dehydration which is one cause of death in diarrhea sufferers. Along with water, sufferers also lose dangerous amounts of important salts, electrolytes, and other nutrients. There are at least four types of diarrhea: secretory diarrhea, osmotic diarrhea, motility-related diarrhea, and inflammatory diarrhea.

Visualization


Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
NZ_MW264504.1 See Comparison
CP142544.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_CP041174.1 See Comparison
CP142544.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_MH522418.1 See Comparison
CP142544.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_CP133488.1 See Comparison
CP142544.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP075373.1 See Comparison
CP142544.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_KY019258.1 See Comparison
CP142544.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP133488.1 See Comparison
NZ_CP047528.1 See Comparison
NZ_CP047549.1 See Comparison
NZ_CP047526.1 See Comparison
NZ_CP047556.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_MK673547.1 See Comparison
CP142544.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_KY019259.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_KY019258.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP019394.1 See Comparison


Plasmid Visualization


NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)

NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD

NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing


based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2