Plasmid NZ_CP019394.1

Sequence

Nucleotide Information

Accession NZ_CP019394.1
Description Escherichia coli strain XH992 plasmid pXH992_1, complete sequence
Source refseq
Topology circular
Length 248458 bp
GC Content 0.46 %
Created at NCBI Feb. 9, 2021



Assembly

Genome Data Information

Accession GCF_016806045.1
Assembly Coverage 452


Biosample

Curated Collection Information
Accession 6240306

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.256769N;120.201999E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.26/120.20
Address Hanghai Road, 钱杭社区, Sijiqing, Shangcheng District, Hangzhou City, Zhejiang, 310026, China

ECOSYSTEM
Original Query Homo sapiens,urine
Classification host_associated,urinary_system
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Intracranial Injury
DOID/SYMP
  • Traumatic brain injury (DOID:0081292 )
    • A brain disease that is characterized by brain dysfunction caused by an outside force, usually a violent blow to the head.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061123.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_CP035918.1 See Comparison
CP142544.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP061123.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_MK673547.1 See Comparison
CP142544.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP061123.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP041174.1 See Comparison
CP142544.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_CP061123.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_LT795115.1 See Comparison
CP142544.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP061123.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_MH522418.1 See Comparison
CP142544.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061123.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_LT795115.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK673549.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MH522418.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_CP035918.1 See Comparison
CP142544.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061123.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091570.1 See Comparison
NZ_CP086221.1 See Comparison
NZ_CP075373.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_CP041174.1 See Comparison
NZ_CP035918.1 See Comparison
NZ_LT795115.1 See Comparison
CP142544.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore


Detected typing markers by plasmidfinder
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2
NUCCORE ACC Typing Identity Coverage Start End Strand HSP length Template length Position in ref Positions in Contig Note Accession Hit id Organism L1 Organism L2