Plasmid NZ_CP101383.1

Sequence

Nucleotide Information

Accession NZ_CP101383.1
Description Salmonella enterica strain SC2017030 plasmid pSC2017030-mcr-257k, complete sequence
Source refseq
Topology circular
Length 257067 bp
GC Content 0.47 %
Created at NCBI July 23, 2022



Assembly

Genome Data Information

Accession GCF_024364965.1
Assembly Coverage 100


Biosample

Curated Collection Information
Accession 29630349

PLASMID INFORMATION

GEOGRAPHICAL INFORMATION
Original Query 30.67N;104.07E
Original Query Type coordinates
Coordinates (Lat/Lon) 30.67/104.07
Address 锣锅巷, Gulou, Xiyuhe, Qingyang District, Chengdu, High-Tech Zone (West), Sichuan, 610015, China

ECOSYSTEM
Original Query Homo sapiens
Classification host_associated
Host-associated Taxon
  • Homo sapiens (9606)

DISEASE
Original Query Salmonella gastroenteritis
DOID/SYMP
  • Salmonellosis (DOID:0060859 )
    • A primary bacterial infectious disease caused by the bacteria of the genus Salmonella. It has symptoms diarrhea, fever, vomiting, and abdominal cramps 12 to 72 hours after infection. In most cases, the illness lasts four to seven days, and most people recover without treatment.

Visualization

PNG JSON

Plasmids from same Biosample



Similar Plasmids

based on Mash distance

NZ_CP061125.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_MW356909.1 See Comparison
CP142544.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_MW264504.1 See Comparison
CP142544.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101383.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_MW264504.1 See Comparison
CP142544.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_MK673547.1 See Comparison
CP142544.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_MW264504.1 See Comparison
NZ_KU341381.1 See Comparison
CP142544.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_CP019394.1 See Comparison
NZ_CP061125.1 See Comparison
NZ_MG773376.1 See Comparison
NZ_CP101391.1 See Comparison
NZ_CP091555.1 See Comparison
NZ_MW356909.1 See Comparison
NZ_MW264504.1 See Comparison
CP142544.1 See Comparison
NZ_MK673547.1 See Comparison
NZ_MK477617.1 See Comparison
NZ_MK477612.1 See Comparison
NZ_MK477616.1 See Comparison
NZ_MK477606.1 See Comparison
NZ_MK673548.1 See Comparison
NZ_MK477614.1 See Comparison
NZ_MK477605.1 See Comparison
NZ_CP061120.1 See Comparison
NZ_KU341381.1 See Comparison
NZ_CP019394.1 See Comparison


Plasmid Visualization

JSON GENBANK

NUCCORE ACC Source Element Name Display Sequence Favorite
NUCCORE ACC Source Element Name Display Sequence Favorite



Annotations

based on the NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process
NUCCORE ACC Gene Locus Tag Product Protein id Codon Start Translation Table GO process



Antimicrobial Resistance

based on NCBIAMRFinder and CARD
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)
NUCCORE ACC Analysis Software Name Reference Database Version Gene Symbol Gene Name Drug Class Antimicrobial Agent Gene Start Gene Stop Gene Length Strand Orientation Sequence Identity (%) Coverage (%)



Typing

based on MOB-Typer and Plasmid Multilocus Sequencing Typing (PMLST)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)
NUCCORE ACC Contigs md5 hash Replicon Type Relaxase Type MPF Type OriT Type Predicted Mobility Primary Cluster ID Secondary Cluster ID Observed Host Range Ncbi Rank Observed Host Range Ncbi Name Mash Nearest Neighbor Mash Neighbor Distance Mash Neighbor Identification Reported Host Range Lit Rank Reported Host Range Lit Name Replicon Type Accession Relaxase Type Accession MPF Type Accession OriT Type Accession Associated PMID(s)




BLAST results of detected typing markers by MOB-type
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore
NUCCORE ACC biomarker MOB-suite ID Element Start End Strand Identity Coverage Evalue Bitscore